Browse Element(s) Details


Os.50288.1.S1_at

Description gb:AK120543.1
DB_XREF= gi:37990166
TID=Os.50288.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50288 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129I18, full insert sequence.
FL= gb:AK120543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g172929/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17240Os.8089.1.S1_at11/112+9885607..9888391pollen-specific kinase partner protein, putative, expressed
LOC_Os02g17250Os.18074.1.A1_at11/112+9888628..9893606expressed protein
LOC_Os02g17260OsAffx.24290.1.S1_at11/112+9894795..9895713hypothetical protein
LOC_Os02g17270OsAffx.24291.1.S1_at11/112+9898845..9899207hypothetical protein
LOC_Os02g17280Os.51013.1.S1_s_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.51013.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.52125.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17292Os.50288.2.S1_at11/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17292Os.50288.1.S1_at9/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17304Os.54023.1.S1_at11/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.25952.1.S1_s_at2/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.13573.1.S1_at1/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17320Os.5917.1.S1_a_at11/112+9928817..9937359uridine kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50288.1.S1_at--912--1891Chr02:9915120..9915144 (25 bp)
ACGTCAGCCTGGTGGCTTATCGTCT
LOC_Os02g17292
Os.50288.1.S1_at--204--7191NONE
GTCTGGCGCTTCCAGCTTAATTCGT
NONE
Os.50288.1.S1_at--1089--1551NONE
AGCTTAATTCGTCCTGTGGTGCACG
NONE
Os.50288.1.S1_at--448--7251Chr02:9915076..9915099 (24 bp)
GTCCTGTGGTGCACGTTTCTCAACT
LOC_Os02g17292
Os.50288.1.S1_at--274--4911Chr02:9914950..9914974 (25 bp)
GCTTCATTCGCAAGGGAGCCAAAAT
LOC_Os02g17292
Os.50288.1.S1_at--850--2971Chr02:9914928..9914952 (25 bp)
AATGGTGGAGTTTGTTCAGGTTGCT
LOC_Os02g17292
Os.50288.1.S1_at--296--2731Chr02:9914860..9914884 (25 bp)
AAGAATTACGTCATCGCTTTCCATT
LOC_Os02g17292
Os.50288.1.S1_at--779--1891Chr02:9914853..9914877 (25 bp)
ACGTCATCGCTTTCCATTGGCTGAA
LOC_Os02g17292
Os.50288.1.S1_at--579--3531Chr02:9914785..9914809 (25 bp)
CATCGTCACCTTCTGTTCCTGATTA
LOC_Os02g17292
Os.50288.1.S1_at--935--2212Chr02:9914759..9914783 (25 bp)
ACAAGCGATGAAGCTTCTTCGGCGC
LOC_Os02g17292
Os.50288.1.S1_at--959--5831Chr02:9914667..9914691 (25 bp)
GACCTAATAGTGACTGACTGGGCCA
LOC_Os02g17292
Target Sequence 
ACGTCAGCCTGGTGGCTTATCGTCTGGCGCTTCCAGCTTAATTCGTCCTGTGGTGCACGTTTCTCAACTCAAGAAAGCAT
TGGCTCCTACTGAAAAAGTTCAATCTCACTTGCCAGTTTTCCTTGCTGATCAAGATACTTCACCAACTCCTCTCCGCATT
TTGGATCGGCGCTTCATTCGCAAGGGAGCCAAAATGGTGGAGTTTGTTCAGGTTGCTTGGTCTGGACCAGATGTTCAGGT
GATCACCTAGGAGAATGCTCAAGAATTACGTCATCGCTTTCCATTGGCTGAAGCTTGGGGACAAGCTTCGTCTCAACGGG
GGGAGAATGTCACGGCATCGTCACCTTCTGTTCCTGATTAGACAAGCGATGAAGCTTCTTCGGCGCACCAAGATGGGCTC
AGAAAGTCGCGTCGTGAACGGCGGCCCAATCCGGCCTATCACGGGAGTGAGTGGACCTAATAGTGACTGACTGGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis