Browse Element(s) Details


Os.50288.2.S1_at

Description gb:AK111345.1
DB_XREF= gi:32996554
TID=Os.50288.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50288 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G01, full insert sequence.
FL= gb:AK111345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1729211/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17240Os.8089.1.S1_at11/112+9885607..9888391pollen-specific kinase partner protein, putative, expressed
LOC_Os02g17250Os.18074.1.A1_at11/112+9888628..9893606expressed protein
LOC_Os02g17260OsAffx.24290.1.S1_at11/112+9894795..9895713hypothetical protein
LOC_Os02g17270OsAffx.24291.1.S1_at11/112+9898845..9899207hypothetical protein
LOC_Os02g17280Os.51013.1.S1_s_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.51013.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.52125.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17292Os.50288.2.S1_at11/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17292Os.50288.1.S1_at9/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17304Os.54023.1.S1_at11/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.25952.1.S1_s_at2/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.13573.1.S1_at1/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17320Os.5917.1.S1_a_at11/112+9928817..9937359uridine kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50288.2.S1_at--56--2911Chr02:9912980..9913001 (22 bp)
AAGGATGCCCCAGTGAAGAATGTCA
LOC_Os02g17292
Os.50288.2.S1_at--906--7071Chr02:9912962..9912983 (22 bp)
GTCAATCACTTACCAGTACAGGGCA
LOC_Os02g17292
Os.50288.2.S1_at--1100--6931Chr02:9912838..9912862 (25 bp)
GTAGTTGCATTAGTTCCACTGGATT
LOC_Os02g17292
Os.50288.2.S1_at--19--3511Chr02:9912762..9912786 (25 bp)
CATGGGATCAGGGACTCAGTTTACA
LOC_Os02g17292
Os.50288.2.S1_at--360--2191Chr02:9912737..9912761 (25 bp)
ACAAAAACGCTCTCAGGATCAAAAT
LOC_Os02g17292
Os.50288.2.S1_at--739--1791Chr02:9912705..9912729 (25 bp)
ACCCTGATAATAGATACACCCGTTA
LOC_Os02g17292
Os.50288.2.S1_at--568--2171Chr02:9912690..9912714 (25 bp)
ACACCCGTTAACATAGATCTCTTGA
LOC_Os02g17292
Os.50288.2.S1_at--648--6091Chr02:9912667..9912691 (25 bp)
GAGTAACTCATAGCTTTGTAAACCC
LOC_Os02g17292
Os.50288.2.S1_at--339--2071Chr02:9912617..9912641 (25 bp)
ACTTGCAGTGGTACGATGTCACGAT
LOC_Os02g17292
Os.50288.2.S1_at--428--5651Chr02:9912588..9912612 (25 bp)
GACAGCAGAACTTGCAACTGAGTTT
LOC_Os02g17292
Os.50288.2.S1_at--402--6072Chr02:8192141..8192163 (22 bp)
GAGTTTTCTACTATTTCTTCAGTGG
NONE
Target Sequence 
AAGGATGCCCCAGTGAAGAATGTCAATCACTTACCAGTACAGGGCATAGTGGTGAACATTTCTATTGTAGTTGCATTAGT
TCCACTGGATTGCATATTCCAGAAGGACATAGATGGAGATGTTTCTATAAAGTCCAAGAAGGCATGGGATCAGGGACTCA
GTTTACAACAAAAACGCTCTCAGGATCAAAATCCAACAAACCCTGATAATAGATACACCCGTTAACATAGATCTCTTGAG
TAACTCATAGCTTTGTAAACCCATTGGAGAAGATACAGAAGAACAGTACTTGCAGTGGTACGATGTCACGATACATGACA
GCAGAACTTGCAACTGAGTTTTCTACTATTTCTTCAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50288.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis