Browse Element(s) Details

Os.50300.1.S1_at

Description

gb:AK120604.1
DB_XREF= gi:37990227
TID=Os.50300.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013150B18, full insert sequence.
FL= gb:AK120604.1 gb:AK102614.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g20040	11/11	Eukaryotic aspartyl protease family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g19990	Os.12376.1.S1_at	11/11	6	+	11460524..11463788	expressed protein
LOC_Os06g19990	Os.3053.1.A1_at	1/11	6	+	11460524..11463788	expressed protein
LOC_Os06g20000	OsAffx.15509.1.S1_at	11/11	6	+	11468461..11468730	hypothetical protein
LOC_Os06g20010	OsAffx.4877.1.S1_at	11/11	6	+	11473474..11473743	RNA recognition motif, putative
LOC_Os06g20010	OsAffx.4877.1.S1_x_at	11/11	6	+	11473474..11473743	RNA recognition motif, putative
LOC_Os06g20020	NA	NA	6	+	11475505..11476803	Zinc finger, C2H2 type family protein, expressed
LOC_Os06g20030	Os.49962.1.S1_at	11/11	6	+	11482109..11485822	group II intron splicing factor CRS1, putative, expressed
LOC_Os06g20030	Os.39087.1.S1_at	1/11	6	+	11482109..11485822	group II intron splicing factor CRS1, putative, expressed
LOC_Os06g20040	Os.50300.1.S1_at	11/11	6	+	11485981..11493270	Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20040	Os.50300.1.S1_s_at	11/11	6	+	11485981..11493270	Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20040	Os.17403.1.S1_a_at	1/11	6	+	11485981..11493270	Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20050	NA	NA	6	+	11497993..11502824	NB-ARC domain containing protein
LOC_Os06g20060	OsAffx.15510.1.S1_at	11/11	6	+	11503386..11506370	expressed protein
LOC_Os06g20070	OsAffx.4878.1.S1_at	11/11	6	+	11508924..11509777	hypothetical protein
LOC_Os06g20080	OsAffx.4153.1.S1_s_at	3/11	6	+	11511038..11511710	hypothetical protein
LOC_Os06g20080	Os.12293.1.S1_a_at	1/11	6	+	11511038..11511710	hypothetical protein
LOC_Os06g20090	Os.38062.1.S1_at	11/11	6	+	11514409..11524786	non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20090	OsAffx.20517.1.S1_at	2/11	6	+	11514409..11524786	non-repetitive/WGA-negative nucleoporin family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0003677	molecular_function	DNA binding
GO:0004194	molecular_function	pepsin A activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50300.1.S1_at--94--425	1	Chr06:11486546..11486570 (25 bp)	CCGGGAACGTGCTCATCGACGTCGA	LOC_Os06g20040
Os.50300.1.S1_at--1021--761	1	Chr06:11486544..11486568 (25 bp)	GGGAACGTGCTCATCGACGTCGACG	LOC_Os06g20040
Os.50300.1.S1_at--475--395	1	Chr06:11486485..11486509 (25 bp)	CGGCACGGCGATCATCGGGAACACG	LOC_Os06g20040
Os.50300.1.S1_at--391--749	1	Chr06:11486442..11486466 (25 bp)	GTGGTGTACGACGTCGCGCAGTCCA	LOC_Os06g20040
Os.50300.1.S1_at--878--861	1	Chr06:11486441..11486465 (25 bp)	TGGTGTACGACGTCGCGCAGTCCAG	LOC_Os06g20040
Os.50300.1.S1_at--37--995	1	Chr06:11486436..11486460 (25 bp)	TACGACGTCGCGCAGTCCAGGATCG	LOC_Os06g20040
Os.50300.1.S1_at--47--187	1	Chr06:11486435..11486459 (25 bp)	ACGACGTCGCGCAGTCCAGGATCGG	LOC_Os06g20040
Os.50300.1.S1_at--141--577	1	Chr06:11486433..11486457 (25 bp)	GACGTCGCGCAGTCCAGGATCGGCT	LOC_Os06g20040
Os.50300.1.S1_at--9--191	1	Chr06:11486432..11486456 (25 bp)	ACGTCGCGCAGTCCAGGATCGGCTT	LOC_Os06g20040
Os.50300.1.S1_at--968--723	1	Chr06:11486430..11486454 (25 bp)	GTCGCGCAGTCCAGGATCGGCTTCG	LOC_Os06g20040
Os.50300.1.S1_at--425--457	1	Chr06:11486427..11486451 (25 bp)	GCGCAGTCCAGGATCGGCTTCGCCG	LOC_Os06g20040

Target Sequence

CCGGGAACGTGCTCATCGACGTCGACGACTCCACGACGTGCCTGGCGTTCGCGCCGACCGGCGGCACGGCGATCATCGGG
AACACGCAGCAGCAGACGTTCAGCGTGGTGTACGACGTCGCGCAGTCCAGGATCGGCTTCGCCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis