Browse Element(s) Details


Os.50332.1.S1_at

Description gb:AK120762.1
DB_XREF= gi:37990385
TID=Os.50332.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50332 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007G09, full insert sequence.
FL= gb:AK120762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4296011/11Lung seven transmembrane receptor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42920Os.27539.1.A1_at11/114+25170554..25176317Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g42930Os.3372.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42930OsAffx.26436.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42940OsAffx.4066.1.S1_at11/114+25181161..25182428expressed protein
LOC_Os04g42950Os.56210.1.S1_at11/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42950Os.57514.1.S1_x_at1/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42960Os.50332.1.S1_at11/114+25197992..25199617Lung seven transmembrane receptor family protein, expressed
LOC_Os04g42970OsAffx.14248.1.S1_at11/114+25201206..25201820hypothetical protein
LOC_Os04g42980Os.52137.1.S1_at11/114+25204973..25210172zinc finger family protein, putative, expressed
LOC_Os04g42990OsAffx.14249.1.S1_at9/114+25213102..25219840Ssl1-like family protein, expressed
LOC_Os04g42990Os.50619.1.S1_x_at1/114+25213102..25219840Ssl1-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50332.1.S1_at--1147--8211Chr04:25199087..25199111 (25 bp)
GGCAAGGCGGCCAGGAACCTCAAGA
LOC_Os04g42960
Os.50332.1.S1_at--523--1451Chr04:25199109..25199133 (25 bp)
AGAAGCTCACCCTCTTCAAGCAGTT
LOC_Os04g42960
Os.50332.1.S1_at--494--9571Chr04:25199262..25199286 (25 bp)
TCTTCGTCTTCTACAACTTCAAGCC
LOC_Os04g42960
Os.50332.1.S1_at--615--10491Chr04:25199279..25199303 (25 bp)
TTCAAGCCGGTGGAGAACAACCCGT
LOC_Os04g42960
Os.50332.1.S1_at--173--6251Chr04:25199353..25199377 (25 bp)
GATGGAGGGCACTTTCGAGATATAA
LOC_Os04g42960
Os.50332.1.S1_at--759--591Chr04:25199422..25199446 (25 bp)
ATGCCTCTCCAAGTTTTGTACGTAG
LOC_Os04g42960
Os.50332.1.S1_at--1130--10031Chr04:25199444..25199468 (25 bp)
TAGATGATGGTGCACTGCGTCTTTC
LOC_Os04g42960
Os.50332.1.S1_at--777--9551Chr04:25199463..25199487 (25 bp)
TCTTTCTGCACGCAGCTGTGTATAA
LOC_Os04g42960
Os.50332.1.S1_at--149--1591Chr04:25199509..25199533 (25 bp)
AGCTCCTGCCTGCACAAAATGCGTT
LOC_Os04g42960
Os.50332.1.S1_at--146--2451Chr04:25199524..25199548 (25 bp)
AAAATGCGTTGGCACGCCCTTCAGC
LOC_Os04g42960
Os.50332.1.S1_at--825--1471Chr04:25199546..25199570 (25 bp)
AGCAATTCTGTGATTCCCCACGGGA
LOC_Os04g42960
Target Sequence 
GGCAAGGCGGCCAGGAACCTCAAGAAGCTCACCCTCTTCAAGCAGTTCTACCTCGTCGTCGTCGGCTACCTCTACTTCAC
GCGGATCGCCGTCTCGGCCTTCGCCGCCGTGCTCAGCTACAGGTACCAGTGGGTGGTCACCGTCGCCATGGAGGCGGCCA
GCCTGGCCTTCTACATCTTCGTCTTCTACAACTTCAAGCCGGTGGAGAACAACCCGTACCTGTACGTCGGCGAAGACGAG
GAGGAGGAGGCCAGCGGGCAGCTTGAGATGGAGGGCACTTTCGAGATATAAATCATGGACATAATATATATGACATGGCT
GCCTAACCTCTGCACATGCCTCTCCAAGTTTTGTACGTAGATGATGGTGCACTGCGTCTTTCTGCACGCAGCTGTGTATA
AATCACCATGCAAAAAAAAGGTAGCTCCTGCCTGCACAAAATGCGTTGGCACGCCCTTCAGCAATTCTGTGATTCCCCAC
GGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis