Browse Element(s) Details


Os.50336.1.S1_x_at

Description gb:AK120776.1
DB_XREF= gi:37990399
TID=Os.50336.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009G15, full insert sequence.
FL= gb:AK120776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1143011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11370Os.43507.1.A1_x_at11/111+6109613..6122311Helicase associated domain family protein, expressed
LOC_Os01g11370Os.50431.1.S1_at1/111+6109613..6122311Helicase associated domain family protein, expressed
LOC_Os01g11390OsAffx.22116.1.S1_x_at1/111+6126132..6126539hypothetical protein
LOC_Os01g11400NANA1+6129092..6129921hypothetical protein
LOC_Os01g11414Os.3917.1.S1_s_at11/111+6131005..6135960Sodium/calcium exchanger protein, expressed
LOC_Os01g11414Os.3917.2.S1_x_at11/111+6131005..6135960Sodium/calcium exchanger protein, expressed
LOC_Os01g11430Os.50336.1.S1_x_at11/111+6136384..6138446expressed protein
LOC_Os01g11450OsAffx.19542.3.S1_x_at3/111+6159989..6163187retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50336.1.S1_x_at--624--10851Chr01:6137409..6137433 (25 bp)
TTGGCCGATGTTGGTCCTGACCTGA
LOC_Os01g11430
Os.50336.1.S1_x_at--1036--1391Chr01:6136927..6136951 (25 bp)
AGACTGGACATCTGACTTTGCTCAC
LOC_Os01g11430
Os.50336.1.S1_x_at--180--2731Chr01:6136824..6136848 (25 bp)
AAGCAGCCTCATGTGGTGCCATCAT
LOC_Os01g11430
Os.50336.1.S1_x_at--161--7291Chr01:6136809..6136833 (25 bp)
GTGCCATCATACAACGACTTCAGTG
LOC_Os01g11430
Os.50336.1.S1_x_at--737--3451Chr01:6136794..6136813 (20 bp)
CAGTGCCATGGCATCTCAGGGAAGC
LOC_Os01g11430
Os.50336.1.S1_x_at--773--2711Chr01:6136670..6136694 (25 bp)
AAGCAACATTTCATCATCGTCGTCG
LOC_Os01g11430
Os.50336.1.S1_x_at--28--8931Chr01:6136593..6136617 (25 bp)
TGAGCGAGTGCAAGACCGATGTGTC
LOC_Os01g11430
Os.50336.1.S1_x_at--785--4231Chr01:6136578..6136602 (25 bp)
CCGATGTGTCTGAAGGCGTCGACTT
LOC_Os01g11430
Os.50336.1.S1_x_at--122--3171Chr01:6136537..6136561 (25 bp)
AATTGCTGAACTGAACTTGTCCTGT
LOC_Os01g11430
Os.50336.1.S1_x_at--47--2071Chr01:6136523..6136547 (25 bp)
ACTTGTCCTGTTGCTTTCTGAAAAA
LOC_Os01g11430
Os.50336.1.S1_x_at--152--8691Chr01:6136486..6136510 (25 bp)
TGAGGTTTACCCAATTACCCTGTTG
LOC_Os01g11430
Target Sequence 
TTGGCCGATGTTGGTCCTGACCTGAGCAGATACGAGTTCAGAGCAACAAATTATTTCAGTGCCAATGCAAATTGTTCAGA
CTGGACATCTGACTTTGCTCACTGCAAAAGCAGCAAGGAGAACGGCCGTGCCAGAGACCCTGCCTTCCTCACCTTGAGCT
CACAGCCTCCACACCTCCTCAAGCAGCCTCATGTGGTGCCATCATACAACGACTTCAGTGCCATGGCATCTCAGGGAAGC
AACATTTCATCATCGTCGTCGCAGCCATTCTACAGCTTCCTTCCAGTCGGTCCGGTTCGTTGCGAAAGGACCTTGAGCGA
GTGCAAGACCGATGTGTCTGAAGGCGTCGACTTAGAACTGAAGCTAGGAAATTGCTGAACTGAACTTGTCCTGTTGCTTT
CTGAAAAAAAAAAACTGCAATGAGGTTTACCCAATTACCCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50336.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis