Browse Element(s) Details


Os.50340.1.S1_at

Description gb:AK120796.1
DB_XREF= gi:37990419
TID=Os.50340.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50340 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012D20, full insert sequence.
FL= gb:AK120796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1577911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15750OsAffx.15443.1.S1_at11/116+8934093..8938019NB-ARC domain containing protein
LOC_Os06g15760Os.11631.1.S1_at11/116+8954692..8958656Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g15779Os.50340.1.S1_at11/116+8959008..8963690expressed protein
LOC_Os06g15779Os.50340.2.S1_x_at10/116+8959008..8963690expressed protein
LOC_Os06g15800OsAffx.30774.2.S1_at11/116+8968632..8970165hypothetical protein
LOC_Os06g15800OsAffx.30774.1.S1_s_at11/116+8968632..8970165hypothetical protein
LOC_Os06g15810Os.50766.1.S1_at11/116+8973515..8975734expressed protein
LOC_Os06g15820Os.50610.1.S1_at11/116+8976348..8980634NHL repeat-containing protein, putative, expressed
LOC_Os06g15830OsAffx.27658.2.S1_at11/116+8985169..8985819hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50340.1.S1_at--561--10671Chr06:8959404..8959428 (25 bp)
TTCCATCCAAATCTGCCACTTGAAG
LOC_Os06g15779
Os.50340.1.S1_at--1161--571Chr06:8959400..8959424 (25 bp)
ATCCAAATCTGCCACTTGAAGACGA
LOC_Os06g15779
Os.50340.1.S1_at--472--4371Chr06:8959398..8959422 (25 bp)
CCAAATCTGCCACTTGAAGACGAGG
LOC_Os06g15779
Os.50340.1.S1_at--663--2271Chr06:8959396..8959420 (25 bp)
AAATCTGCCACTTGAAGACGAGGAA
LOC_Os06g15779
Os.50340.1.S1_at--401--8811Chr06:8959306..8959330 (25 bp)
TGTTGCCCGACTACAGAACGTTGTT
LOC_Os06g15779
Os.50340.1.S1_at--573--6671Chr06:8959305..8959329 (25 bp)
GTTGCCCGACTACAGAACGTTGTTA
LOC_Os06g15779
Os.50340.1.S1_at--225--10531Chr06:8959304..8959328 (25 bp)
TTGCCCGACTACAGAACGTTGTTAA
LOC_Os06g15779
Os.50340.1.S1_at--851--4531Chr06:8959302..8959326 (25 bp)
GCCCGACTACAGAACGTTGTTAATG
LOC_Os06g15779
Os.50340.1.S1_at--867--5691Chr06:8959298..8959322 (25 bp)
GACTACAGAACGTTGTTAATGCATT
LOC_Os06g15779
Os.50340.1.S1_at--667--2131Chr06:8959294..8959318 (25 bp)
ACAGAACGTTGTTAATGCATTTCAA
LOC_Os06g15779
Os.50340.1.S1_at--994--1431Chr06:8959292..8959316 (25 bp)
AGAACGTTGTTAATGCATTTCAAGA
LOC_Os06g15779
Target Sequence 
TTCCATCCAAATCTGCCACTTGAAGACGAGGAAACAAAAACATATGAAAGTGCAAGTGCTCTGTCCTTGGCCACATTTGC
CTCCCTTCTAATCGAGTTTGTTGCCCGACTACAGAACGTTGTTAATGCATTTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis