Browse Element(s) Details


Os.50340.2.S1_x_at

Description gb:AK059623.1
DB_XREF= gi:32969641
TID=Os.50340.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50340 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H05, full insert sequence.
FL= gb:AK059623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1577910/11expressed protein
LOC_Os06g367401/11Pollen-specific protein SF21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15750OsAffx.15443.1.S1_at11/116+8934093..8938019NB-ARC domain containing protein
LOC_Os06g15760Os.11631.1.S1_at11/116+8954692..8958656Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g15779Os.50340.1.S1_at11/116+8959008..8963690expressed protein
LOC_Os06g15779Os.50340.2.S1_x_at10/116+8959008..8963690expressed protein
LOC_Os06g15800OsAffx.30774.2.S1_at11/116+8968632..8970165hypothetical protein
LOC_Os06g15800OsAffx.30774.1.S1_s_at11/116+8968632..8970165hypothetical protein
LOC_Os06g15810Os.50766.1.S1_at11/116+8973515..8975734expressed protein
LOC_Os06g15820Os.50610.1.S1_at11/116+8976348..8980634NHL repeat-containing protein, putative, expressed
LOC_Os06g15830OsAffx.27658.2.S1_at11/116+8985169..8985819hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50340.2.S1_x_at--652--10791Chr06:8959523..8959547 (25 bp)
TTGTTGAACAAACTACAGCGCATCA
LOC_Os06g15779
Os.50340.2.S1_x_at--22--1571Chr06:8959491..8959515 (25 bp)
AGCTTTGCTGTTAATTCATTTCTGA
LOC_Os06g15779
Os.50340.2.S1_x_at--976--10591Chr06:8959472..8959496 (25 bp)
TTCTGAGCAGACATGATTCATCATC
LOC_Os06g15779
Os.50340.2.S1_x_at--432--2831Chr06:8959434..8959458 (25 bp)
AAGTTACTGTCTTGGCCTGCTCGAA
LOC_Os06g15779
Os.50340.2.S1_x_at--584--3831Chr06:8959418..8959442 (25 bp)
CTGCTCGAAGATCATTCCATCCAAA
LOC_Os06g15779
Os.50340.2.S1_x_at--719--671Chr06:8959361..8959385 (25 bp)
ATGAAAGTGCAAGTGCTCTGTCCTT
LOC_Os06g15779
Os.50340.2.S1_x_at--610--2852Chr06:8959351..8959375 (25 bp)
AAGTGCTCTGTCCTTGGCCACATTT
LOC_Os06g15779
Os.50340.2.S1_x_at--471--6771Chr06:8959160..8959184 (25 bp)
GTTAACATCGCAAATGACCCTACTA
LOC_Os06g15779
Os.50340.2.S1_x_at--455--691Chr06:8959147..8959171 (25 bp)
ATGACCCTACTAGTTTCATCTGAAA
LOC_Os06g15779
Os.50340.2.S1_x_at--1030--9591Chr06:8959132..8959156 (25 bp)
TCATCTGAAACCTTGTTATTCTTTT
LOC_Os06g15779
Os.50340.2.S1_x_at--790--8971Chr06:8959007..8959031 (25 bp)
TGAATGGAGCTCCAGTTTGCTACCA
NONE
Target Sequence 
TTGTTGAACAAACTACAGCGCATCANTCAAAAAGCTTTGCTGTTAATTCATTTCTGAGCAGACATGATTCATCATCAACT
GTAGANNNTTTCAAGTTACTGTCTTGGCCTGCTCGAAGATCATTCCATCCAAANCTGCCACTTGNAAGACGAGGAAACAA
AAACATATGAAAGTGCAAGTGCTCTGTCCTTGGCCACATTTGCCTCCCTTNTAATCGAGTTTGTTGCCCGACTNCAGAAN
GNTGNTAATGCATTTCAAGAGTTGAGTGATAAGGCTAACTTCAAAGAGCCTGNGCAGGAGCCTGNTGCAGTTAGTACTAG
NGATGGCGGCTTTNTCCATAAAATATGCAAATTCGTCGGAATCAANAGTTAACATCGCAAATGACCCTACTAGTTTCATC
TGAAACCTTGTTATTCTTTTTTTTTTTNNCAATACAGTTTTGTTTAAGAATTACGAACCACGAAATGTGTATAAATTCTA
CACTTGTGTATATGCAATGAGAATATTGCGAGCTTTATTTTTGAATGGAGCTCCAGTTTGCTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50340.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis