Browse Element(s) Details


Os.50353.1.S1_at

Description gb:AK120836.1
DB_XREF= gi:37990459
TID=Os.50353.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020K07, full insert sequence.
FL= gb:AK120836.1 gb:AK103664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1195211/11PHD finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11920Os.43464.1.S1_at11/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920OsAffx.11218.1.S1_at7/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920Os.8736.1.S1_a_at1/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920Os.12757.3.S1_at1/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11930NANA1+6488336..6488558NA
LOC_Os01g11940Os.30557.2.S2_x_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11940Os.30557.2.S1_x_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11940Os.30557.1.S1_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11946Os.26825.2.S1_x_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11946Os.26825.1.S1_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11952Os.50353.1.S1_at11/111+6504158..6511442PHD finger protein, putative, expressed
LOC_Os01g11960Os.16133.1.S1_at11/111+6514930..6517828PHD-finger family protein, expressed
LOC_Os01g11970NANA1+6520511..6521254hypothetical protein
LOC_Os01g11980Os.43459.1.S1_at9/111+6522334..6524252expressed protein
LOC_Os01g11990Os.30623.1.S1_at11/111+6525599..6528647expressed protein
LOC_Os01g11990Os.51808.1.S1_at8/111+6525599..6528647expressed protein
LOC_Os01g11990Os.53454.1.S1_x_at2/111+6525599..6528647expressed protein
LOC_Os01g12000Os.5066.1.S1_at11/111+6531414..6532631expressed protein
LOC_Os01g12010OsAffx.23211.1.S1_at11/111+6534456..6534698hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50353.1.S1_at--460--1051Chr01:6504528..6504552 (25 bp)
AGGGTCCCTTGTCTGTGTAAAGCTC
LOC_Os01g11952
Os.50353.1.S1_at--282--8751Chr01:6504513..6504537 (25 bp)
TGTAAAGCTCTTAACTGCCGTGGAT
LOC_Os01g11952
Os.50353.1.S1_at--436--2551Chr01:6504501..6504525 (25 bp)
AACTGCCGTGGATACATGAACTGAA
LOC_Os01g11952
Os.50353.1.S1_at--349--9211Chr01:6504434..6504458 (25 bp)
TGCCAAAGGGCTATATTCTCAGATT
LOC_Os01g11952
Os.50353.1.S1_at--1059--1251Chr01:6504414..6504438 (25 bp)
AGATTCATCATGATTCTTTCGTTTA
LOC_Os01g11952
Os.50353.1.S1_at--789--7911Chr01:6504316..6504340 (25 bp)
GGATTGGATTTACCGGTTTCAGACT
LOC_Os01g11952
Os.50353.1.S1_at--1025--7851Chr01:6504302..6504326 (25 bp)
GGTTTCAGACTTTCGGTGAGAGCAT
LOC_Os01g11952
Os.50353.1.S1_at--645--5011Chr01:6504276..6504300 (25 bp)
GCAGGCACCTGGCAATTTAGCAACA
LOC_Os01g11952
Os.50353.1.S1_at--187--3131Chr01:6504263..6504287 (25 bp)
AATTTAGCAACACGCTGCCAGAGCC
LOC_Os01g11952
Os.50353.1.S1_at--67--3431Chr01:6504245..6504269 (25 bp)
CAGAGCCCCTTGTAAATTCTTCTTA
LOC_Os01g11952
Os.50353.1.S1_at--128--6771Chr01:6504191..6504215 (25 bp)
GTTAATGCCTTTTCTCCATGATGAA
LOC_Os01g11952
Target Sequence 
AGGGTCCCTTGTCTGTGTAAAGCTCTTAACTGCCGTGGATACATGAACTGAAGTGAACATTCTCACAAGTCACAAGGCTA
ACCCCNCTTAACCATGCCAAAGGGCTATATTCTCAGATTCATCATGATTCTTTCGTTTATTCAAAGGCTGGTTGTCAAAC
ANGCATCAAAGTTTGTGATTTTTTTACACAAATTTTGCTAGATAGCGAGGCTGGATTGGATTTACCGGTTTCAGACTTTC
GGTGAGAGCATAGCAGGCACCTGGCAATTTAGCAACACGCTGCCAGAGCCCCTTGTAAATTCTTCTTACTTTGATGTAAT
AATAAGATGATTAAGTTGTTAATGCCTTTTCTCCATGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis