Browse Element(s) Details


Os.50381.1.S1_at

Description gb:AK120960.1
DB_XREF= gi:37990583
TID=Os.50381.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039K16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039K16, full insert sequence.
FL= gb:AK120960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0915011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09140Os.24105.1.A1_at11/1111+4862278..4867304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os11g09150Os.50381.1.S1_at11/1111+4888183..4888945expressed protein
LOC_Os11g09160Os.52508.1.S1_at11/1111+4890449..4895673B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50381.1.S1_at--220--4071Chr11:4888543..4888567 (25 bp)
CGAGGCGCATGTACTCCGGCAGCGT
LOC_Os11g09150
Os.50381.1.S1_at--786--3731Chr11:4888614..4888638 (25 bp)
CTCAAGAACCTCTTCTTGGCCAAGA
LOC_Os11g09150
Os.50381.1.S1_at--255--6191Chr11:4888643..4888667 (25 bp)
GAGGAACAACCCAAGAACTGCACCC
LOC_Os11g09150
Os.50381.1.S1_at--605--1431Chr11:4888656..4888680 (25 bp)
AGAACTGCACCCATCTGAAGCTTTT
LOC_Os11g09150
Os.50381.1.S1_at--1001--5391Chr11:4888672..4888696 (25 bp)
GAAGCTTTTCCGAAACGATCAGTCG
LOC_Os11g09150
Os.50381.1.S1_at--421--4051Chr11:4888687..4888711 (25 bp)
CGATCAGTCGATCAGATTTTTTCTG
LOC_Os11g09150
Os.50381.1.S1_at--180--3051Chr11:4888731..4888755 (25 bp)
AATCCGAGAGCTGATGATGATCTTG
LOC_Os11g09150
Os.50381.1.S1_at--1027--6851Chr11:4888841..4888865 (25 bp)
GTTTGATGTTTCTGTCACAGGACAG
LOC_Os11g09150
Os.50381.1.S1_at--289--2111Chr11:4888857..4888881 (25 bp)
ACAGGACAGAGTAACCCAAGGAGGT
LOC_Os11g09150
Os.50381.1.S1_at--614--911Chr11:4888878..4888902 (25 bp)
AGGTAAATTTCCTCTCTTTTGCTGA
LOC_Os11g09150
Os.50381.1.S1_at--248--3771Chr11:4888891..4888915 (25 bp)
CTCTTTTGCTGAAGTGTGTGTTCTT
LOC_Os11g09150
Target Sequence 
CGAGGCGCATGTACTCCGGCAGCGTGGTGCGGCGGCGCCGGAGATGGAGCCTGCTGCTGATGCTCAGGCTGCTCAAGAAC
CTCTTCTTGGCCAAGAACACGAGGAACAACCCAAGAACTGCACCCATCTGAAGCTTTTCCGAAACGATCAGTCGATCAGA
TTTTTTCTGGAGGTTTCAGAAATCAAGAAATCCGAGAGCTGATGATGATCTTGATCACGATGATGATGATGAGGATGAGT
TATATACACGAGTGTAAAATAGTAATGTGCATATATTTGATATCTATTAGTACTACATGTTTGATGTTTCTGTCACAGGA
CAGAGTAACCCAAGGAGGTAAATTTCCTCTCTTTTGCTGAAGTGTGTGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis