Browse Element(s) Details


Os.24105.1.A1_at

Description gb:AK120356.1
DB_XREF= gi:37989979
TID=Os.24105.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067B07, full insert sequence.
FL= gb:AK120356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0914011/11Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09110OsAffx.18758.1.S1_at11/1111+4846957..4848840Leucine Rich Repeat family protein
LOC_Os11g09120Os.35344.18.S1_x_at10/1111+4851589..4854624hypothetical protein
LOC_Os11g09120Os.35344.3.S1_x_at8/1111+4851589..4854624hypothetical protein
LOC_Os11g09120OsAffx.22940.5.S1_x_at3/1111+4851589..4854624hypothetical protein
LOC_Os11g09120OsAffx.22940.5.S1_at2/1111+4851589..4854624hypothetical protein
LOC_Os11g09130NANA11+4856696..4858627Leucine Rich Repeat family protein, expressed
LOC_Os11g09140Os.24105.1.A1_at11/1111+4862278..4867304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os11g09150Os.50381.1.S1_at11/1111+4888183..4888945expressed protein
LOC_Os11g09160Os.52508.1.S1_at11/1111+4890449..4895673B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24105.1.A1_at--228--4331Chr11:4862907..4862931 (25 bp)
CCATTGTCACTTCCCAAAGCTGATA
LOC_Os11g09140
Os.24105.1.A1_at--1106--4731Chr11:4862889..4862913 (25 bp)
GCTGATAATCGCTACCTAATGGAAG
LOC_Os11g09140
Os.24105.1.A1_at--439--7731Chr11:4862727..4862751 (25 bp)
GGTGGAGCTTTTACAAAGTCTATGC
LOC_Os11g09140
Os.24105.1.A1_at--118--3871Chr11:4862687..4862711 (25 bp)
CTGTTGATAACTCTTTTCTGGATGA
LOC_Os11g09140
Os.24105.1.A1_at--410--2011Chr11:4862678..4862702 (25 bp)
ACTCTTTTCTGGATGATGATTGCTC
LOC_Os11g09140
Os.24105.1.A1_at--746--10351Chr11:4862499..4862523 (25 bp)
TTTTAGGCAGTCATGCAGTTGTGCT
LOC_Os11g09140
Os.24105.1.A1_at--969--5031Chr11:4862485..4862509 (25 bp)
GCAGTTGTGCTGCAATTTGAGCTTA
LOC_Os11g09140
Os.24105.1.A1_at--673--5671Chr11:4862430..4862454 (25 bp)
GACATCAGGCCTCCATTTTTTATTT
LOC_Os11g09140
Os.24105.1.A1_at--647--9531Chr11:4862410..4862434 (25 bp)
TATTTTTTACCTGTACCTACCTGAT
LOC_Os11g09140
Os.24105.1.A1_at--958--9971Chr11:4862397..4862421 (25 bp)
TACCTACCTGATAAAACTGCTGCCC
LOC_Os11g09140
Os.24105.1.A1_at--822--2551Chr11:4862383..4862407 (25 bp)
AACTGCTGCCCAACATAGTTGTCAA
LOC_Os11g09140
Target Sequence 
CCATTGTCACTTCCCAAAGCTGATAATCGCTACCTAATGGAAGACTTTCCAGTTAGATANAAAGACTTGAATATTGCCTG
ATNAAGATANTTNTTCGACATCACATGCTANGAACCTTTCGGAAAATTGGCGCCTCACACAATGNTCAGACATGACATAA
CTTGATGATGAAGAACTGGAGGTGGAGCTTTTACAAAGTCTATGCATANGACGNAATTANCTGTTGATAACTCTTTTCTG
GATGATGATTGCTCTAATATGGAGGAAAACAGGGATTGTTCCAACCTTAAANCCAGTTGANACTTGAGAGAAAGTTGTTC
CAGAATACCAGTTNTGGAAAAGAACATGAAGTGCAGTTGCACATGGTGGCATCCTTTANACTTTCNTTTTTTTTNNNNAA
AAANATATTTTTAGGCAGTCATGCAGTTGTGCTGCAATTTGAGCTTACCTGATTTTTCTAGGAAGATGTAAAATAGGGAC
ATCAGGCCTCCATTTTTTATTTTTTACCTGTACCTACCTGATAAAACTGCTGCCCAACATAGTTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24105.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis