Browse Element(s) Details


Os.52508.1.S1_at

Description gb:AK067571.1
DB_XREF= gi:32977589
TID=Os.52508.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52508 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108N22, full insert sequence.
FL= gb:AK101941.1 gb:AK067571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0916011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09140Os.24105.1.A1_at11/1111+4862278..4867304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os11g09150Os.50381.1.S1_at11/1111+4888183..4888945expressed protein
LOC_Os11g09160Os.52508.1.S1_at11/1111+4890449..4895673B3 DNA binding domain containing protein, expressed
LOC_Os11g09170Os.18115.1.S1_at11/1111+4914681..4919536expressed protein
LOC_Os11g09180Os.16036.1.S1_at11/1111+4919657..4921042expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52508.1.S1_at--232--1111Chr11:4890975..4890999 (25 bp)
AGTGATCGTTCTGTTGGTTCTTTCA
LOC_Os11g09160
Os.52508.1.S1_at--716--791Chr11:4890902..4890926 (25 bp)
ATGTGTGTGTCTTCGAGCTTGTCCA
LOC_Os11g09160
Os.52508.1.S1_at--360--7331Chr11:4890861..4890885 (25 bp)
GTGCACATCTACAGAGTTGTCCCAG
LOC_Os11g09160
Os.52508.1.S1_at--560--6631Chr11:4890846..4890870 (25 bp)
GTTGTCCCAGAAATTACTCCGCACA
LOC_Os11g09160
Os.52508.1.S1_at--733--1991Chr11:4890820..4890844 (25 bp)
ACTCCGTTCTGACCCGAAGTAACAT
LOC_Os11g09160
Os.52508.1.S1_at--197--10111Chr11:4890792..4890816 (25 bp)
TATGTCGGCATGTTGGAGGCTTCAA
LOC_Os11g09160
Os.52508.1.S1_at--121--3191Chr11:4890770..4890794 (25 bp)
CAATTCCATTGATCTGAGGCTGTAG
LOC_Os11g09160
Os.52508.1.S1_at--679--8951Chr11:4890675..4890699 (25 bp)
TGAACTATTGTTCCGGTTGGGTTGT
LOC_Os11g09160
Os.52508.1.S1_at--838--1091Chr11:4890613..4890637 (25 bp)
AGTGTACTATTGTTGCGGACGTGCA
LOC_Os11g09160
Os.52508.1.S1_at--657--8111Chr11:4890597..4890621 (25 bp)
GGACGTGCAGCCATTGTAATGCTAA
LOC_Os11g09160
Os.52508.1.S1_at--74--6891Chr11:4890472..4890496 (25 bp)
GTATACTGGCCTGAGATCTGAAAAC
LOC_Os11g09160
Target Sequence 
AGTGATCGTTCTGTTGGTTCTTTCAGTGGTGGCTGGGGCAAATTTGCTGTTGGCAACAATCTGGAGAAGTTTGATGTGTG
TGTCTTCGAGCTTGTCCAGAAGGATAACATAAAAGTGCACATCTACAGAGTTGTCCCAGAAATTACTCCGCACAAACTCC
GTTCTGACCCGAAGTAACATTGCTATGTCGGCATGTTGGAGGCTTCAATTCCATTGATCTGAGGCTGTAGTTGGCAGTTA
AAAAACTATTTATATGTTGGTTTCTATAAAAAAAAACAAAATAAGTGCCTAGTTCATAAGTGAACTATTGTTCCGGTTGG
GTTGTTGAATGACTAGTTTAGACCTGGTTGTATTGGTTAAGGAGTGTACTATTGTTGCGGACGTGCAGCCATTGTAATGC
TAAAATGTAACTTGCATTTTTTTTTGTGGCTGTATAATATTTTTACTGTTATGTTTCATGATATATGTCATAGATAGTTG
ATTTCATTCAGATTATCATCAAAGTATACTGGCCTGAGATCTGAAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis