Browse Element(s) Details


Os.18115.1.S1_at

Description gb:AK070130.1
DB_XREF= gi:32980154
TID=Os.18115.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023046C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023046C06, full insert sequence.
FL= gb:AK070130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0917011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09160Os.52508.1.S1_at11/1111+4890449..4895673B3 DNA binding domain containing protein, expressed
LOC_Os11g09170Os.18115.1.S1_at11/1111+4914681..4919536expressed protein
LOC_Os11g09180Os.16036.1.S1_at11/1111+4919657..4921042expressed protein
LOC_Os11g09190OsAffx.18760.1.S1_at11/1111+4927791..4929665expressed protein
LOC_Os11g09200NANA11+4930463..4933361expressed protein
LOC_Os11g09210OsAffx.7051.1.S1_at10/1111+4934820..4935647hypothetical protein
LOC_Os11g09220OsAffx.30895.1.S1_at11/1111+4936761..4937578ankyrin repeat family protein, putative
LOC_Os11g09230OsAffx.30896.1.S1_at11/1111+4941971..4943680expressed protein
LOC_Os11g09230Os.51889.1.S1_x_at2/1111+4941971..4943680expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18115.1.S1_at--136--611Chr11:4919011..4919035 (25 bp)
ATGCCCCTGCTGAGGAATTTAAGCC
LOC_Os11g09170
Os.18115.1.S1_at--806--1031Chr11:4919039..4919063 (25 bp)
AGGTCGCAAGCGATTCTACTCCTTT
LOC_Os11g09170
Os.18115.1.S1_at--615--4211Chr11:4919092..4919116 (25 bp)
CCGCCTTTCTATTTTGCACTTGACA
LOC_Os11g09170
Os.18115.1.S1_at--905--5471Chr11:4919130..4919154 (25 bp)
GAACTATGGCCGTTTGATTTTCGTA
LOC_Os11g09170
Os.18115.1.S1_at--466--10611Chr11:4919149..4919173 (25 bp)
TTCGTAAATTCTTCTGCTCTCGGTA
LOC_Os11g09170
Os.18115.1.S1_at--907--4791Chr11:4919164..4919188 (25 bp)
GCTCTCGGTAAAGTTTTGTTCATTC
LOC_Os11g09170
Os.18115.1.S1_at--81--8271Chr11:4919214..4919238 (25 bp)
GGCATGAACTCCCAGAACTAGTTTA
LOC_Os11g09170
Os.18115.1.S1_at--920--6271Chr11:4919295..4919319 (25 bp)
GATGTAATCCTCAATGGTCTTGTTG
LOC_Os11g09170
Os.18115.1.S1_at--470--2431Chr11:4919344..4919368 (25 bp)
AAAACCTTCTGTAATTTCTCTGTGA
LOC_Os11g09170
Os.18115.1.S1_at--44--3111Chr11:4919397..4919421 (25 bp)
AATTTGTGGAATCTCCAGGCTTCCC
LOC_Os11g09170
Os.18115.1.S1_at--935--4751Chr11:4919498..4919522 (25 bp)
GCTGCAATTGAGCATTCCTTCAACA
LOC_Os11g09170
Target Sequence 
ATGCCCCTGCTGAGGAATTTAAGCCTAAAGGTCGCAAGCGATTCTACTCCTTTACTCTATGATNCTGCAGACCAGTTCCT
GCCGCCTTTCTATTTTGCACTTGACAAAGGCGGATTAGGGAACTATGGCCGTTTGATTTTCGTAAATTCTTCTGCTCTCG
GTAAAGTTTTGTTCATTCTTTTGGGGTGATCTGGGACAAGTGGGGCATGAACTCCCAGAACTAGTTTAGCACTGTGTATT
ATCATATGGTTGTTAAAAGAACTACCAAGTGAAGACATGATTCCGATGTAATCCTCAATGGTCTTGTTGAAATGTAATAC
TACAACAGGAAACAAAACCTTCTGTAATTTCTCTGTGATAGCAAACTAGCAATTTTTTTTTTNGTCTGAATTTGTGGAAT
CTCCAGGCTTCCCTTGTGCTTTTGCTAGATCNAGAACTGAGAATGAATAAGTGATCATCNGNTTGTTTTTTGTTCCATGT
ACTACAGCTTGCTGCAATTGAGCATTCCTTCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis