Browse Element(s) Details


Os.51889.1.S1_x_at

Description gb:AK064197.1
DB_XREF= gi:32974215
TID=Os.51889.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-D06, full insert sequence.
FL= gb:AK064197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0926011/11expressed protein
LOC_Os11g092302/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09220OsAffx.30895.1.S1_at11/1111+4936761..4937578ankyrin repeat family protein, putative
LOC_Os11g09230OsAffx.30896.1.S1_at11/1111+4941971..4943680expressed protein
LOC_Os11g09230Os.51889.1.S1_x_at2/1111+4941971..4943680expressed protein
LOC_Os11g09240OsAffx.22492.1.S1_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified
LOC_Os11g09240OsAffx.22492.1.S1_x_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified
LOC_Os11g09250Os.31312.5.S1_x_at5/1111+4952158..4955416retrotransposon protein, putative, unclassified
LOC_Os11g09250Os.31312.2.S1_x_at4/1111+4952158..4955416retrotransposon protein, putative, unclassified
LOC_Os11g09260Os.51889.1.S1_at11/1111+4961051..4962931expressed protein
LOC_Os11g09260Os.51889.1.S1_x_at11/1111+4961051..4962931expressed protein
LOC_Os11g09270OsAffx.30898.1.S1_at10/1111+4964702..4965853hypothetical protein
LOC_Os11g09280Os.10985.1.S1_at11/1111+4967059..4970854Protein disulfide-isomerase precursor, putative, expressed
LOC_Os11g09290NANA11+4972825..4975422retrotransposon protein, putative, unclassified
LOC_Os11g09300NANA11+4978545..4984107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g09310Os.17200.1.S1_at10/1111+4986813..4988731Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51889.1.S1_x_at--69--2171Chr11:4961605..4961629 (25 bp)
ACACCAACCGAACTTCTCCTGGAGA
LOC_Os11g09260
Os.51889.1.S1_x_at--1006--7911Chr11:4961392..4961416 (25 bp)
GGATTCGCCTCCGACGTCGATGGAC
LOC_Os11g09260
Os.51889.1.S1_x_at--1058--3851Chr11:4961285..4961309 (25 bp)
CTGAGAGTGTTCTGGTGCTTGTTTC
LOC_Os11g09260
Os.51889.1.S1_x_at--1051--7311Chr11:4961271..4961295 (25 bp)
GTGCTTGTTTCGGAATCGCAGGGTT
LOC_Os11g09260
Os.51889.1.S1_x_at--456--532Chr11:4942239..4942263 (25 bp)
ATCGCAGGGTTTGCTTGGATCTTGC
LOC_Os11g09230
Os.51889.1.S1_x_at--3--8572Chr11:4942254..4942278 (25 bp)
TGGATCTTGCCAACAACGACGGCCT
LOC_Os11g09230
Os.51889.1.S1_x_at--643--971Chr11:4961198..4961222 (25 bp)
AGGAGTACCATTCCAGCGGGTCTTT
LOC_Os11g09260
Os.51889.1.S1_x_at--263--1531Chr11:4961184..4961208 (25 bp)
AGCGGGTCTTTACTCCAACAGAACG
LOC_Os11g09260
Os.51889.1.S1_x_at--105--1991Chr11:4961173..4961197 (25 bp)
ACTCCAACAGAACGGTACATCACTT
LOC_Os11g09260
Os.51889.1.S1_x_at--24--7851Chr11:4961160..4961184 (25 bp)
GGTACATCACTTTTACCTCACTAGG
LOC_Os11g09260
Os.51889.1.S1_x_at--27--291Chr11:4961123..4961147 (25 bp)
ATAGTGTCCGATATGGTCTTTTAAG
LOC_Os11g09260
Target Sequence 
ACACCAACCGAACTTCTCCTGGAGACCGACCCGTCCTTGGCCTGCCAGCCGGACGGCGACGGCGACTACCCCATCCACGT
CGCCGCGTCCGCCGGCAACCTGAGGCTCGTCGCCCTCTTGCTCGACAAGTGCCCCGAGTGCGCCGGCCTCCGCGACGCCC
GCGGGAGGACCTTCCTCCACGTCGCCGTCGACCGGAGGAGGCAGGAGGTCGTGGGATTCGCCTCCGACGTCGATGGACGG
GGTTTCCGGCGGCGGCGATCCTCAACGCGCGGGACGACGACGGCAACACCGCGCTGCACCTGGCGGTCGTGGCCGGGGTG
CTGAGAGTGTTCTGGTGCTTGTTTCGGAATCGCAGGGTTTGCTTGGATCTTGCCAACAACGACGGCCTCACACCGGCTGA
CCTGGCCAGGAGTACCATTCCAGCGGGTCTTTACTCCAACAGAACGGTACATCACTTTTACCTCACTAGGGCATGTACAA
AAATAGTGTCCGATATGGTCTTTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51889.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis