Browse Element(s) Details


Os.51889.1.S1_at

Description gb:AK064197.1
DB_XREF= gi:32974215
TID=Os.51889.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-D06, full insert sequence.
FL= gb:AK064197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0926011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09220OsAffx.30895.1.S1_at11/1111+4936761..4937578ankyrin repeat family protein, putative
LOC_Os11g09230OsAffx.30896.1.S1_at11/1111+4941971..4943680expressed protein
LOC_Os11g09230Os.51889.1.S1_x_at2/1111+4941971..4943680expressed protein
LOC_Os11g09240OsAffx.22492.1.S1_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified
LOC_Os11g09240OsAffx.22492.1.S1_x_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified
LOC_Os11g09250Os.31312.5.S1_x_at5/1111+4952158..4955416retrotransposon protein, putative, unclassified
LOC_Os11g09250Os.31312.2.S1_x_at4/1111+4952158..4955416retrotransposon protein, putative, unclassified
LOC_Os11g09260Os.51889.1.S1_at11/1111+4961051..4962931expressed protein
LOC_Os11g09260Os.51889.1.S1_x_at11/1111+4961051..4962931expressed protein
LOC_Os11g09270OsAffx.30898.1.S1_at10/1111+4964702..4965853hypothetical protein
LOC_Os11g09280Os.10985.1.S1_at11/1111+4967059..4970854Protein disulfide-isomerase precursor, putative, expressed
LOC_Os11g09290NANA11+4972825..4975422retrotransposon protein, putative, unclassified
LOC_Os11g09300NANA11+4978545..4984107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g09310Os.17200.1.S1_at10/1111+4986813..4988731Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51889.1.S1_at--106--9131Chr11:4961287..4961311 (25 bp)
TGCTGAGAGTGTTCTGGTGCTTGTT
LOC_Os11g09260
Os.51889.1.S1_at--1044--1091Chr11:4961280..4961304 (25 bp)
AGTGTTCTGGTGCTTGTTTCGGAAT
LOC_Os11g09260
Os.51889.1.S1_at--420--9471Chr11:4961275..4961299 (25 bp)
TCTGGTGCTTGTTTCGGAATCGCAG
LOC_Os11g09260
Os.51889.1.S1_at--1050--7311Chr11:4961271..4961295 (25 bp)
GTGCTTGTTTCGGAATCGCAGGGTT
LOC_Os11g09260
Os.51889.1.S1_at--104--1991Chr11:4961173..4961197 (25 bp)
ACTCCAACAGAACGGTACATCACTT
LOC_Os11g09260
Os.51889.1.S1_at--25--7851Chr11:4961160..4961184 (25 bp)
GGTACATCACTTTTACCTCACTAGG
LOC_Os11g09260
Os.51889.1.S1_at--445--2191Chr11:4961129..4961153 (25 bp)
ACAAAAATAGTGTCCGATATGGTCT
LOC_Os11g09260
Os.51889.1.S1_at--595--3091Chr11:4961124..4961148 (25 bp)
AATAGTGTCCGATATGGTCTTTTAA
LOC_Os11g09260
Os.51889.1.S1_at--1052--7451Chr11:4961120..4961144 (25 bp)
GTGTCCGATATGGTCTTTTAAGTAA
LOC_Os11g09260
Os.51889.1.S1_at--156--291Chr11:4961076..4961100 (25 bp)
ATACTGTTACAATAGTTGAGACAAC
LOC_Os11g09260
Os.51889.1.S1_at--109--5993Chr11:4961059..4961083 (25 bp)
GAGACAACAAGAACTCTTAATCATT
LOC_Os11g09260
Target Sequence 
TGCTGAGAGTGTTCTGGTGCTTGTTTCGGAATCGCAGGGTTTGCTTGGATCTTGCCAACAACGACGGCCTCACACCGGCT
GACCTGGCCAGGAGTACCATTCCAGCGGGTCTTTACTCCAACAGAACGGTACATCACTTTTACCTCACTAGGGCATGTAC
AAAAATAGTGTCCGATATGGTCTTTTAAGTAAGACATATTATTTAAAGAATATACTGTTACAATAGTTGAGACAACAAGA
ACTCTTAATCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis