Browse Element(s) Details


OsAffx.30895.1.S1_at

Description tigr:9639.m00872
TID=OsAffx.30895.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0922011/11ankyrin repeat family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09170Os.18115.1.S1_at11/1111+4914681..4919536expressed protein
LOC_Os11g09180Os.16036.1.S1_at11/1111+4919657..4921042expressed protein
LOC_Os11g09190OsAffx.18760.1.S1_at11/1111+4927791..4929665expressed protein
LOC_Os11g09200NANA11+4930463..4933361expressed protein
LOC_Os11g09210OsAffx.7051.1.S1_at10/1111+4934820..4935647hypothetical protein
LOC_Os11g09220OsAffx.30895.1.S1_at11/1111+4936761..4937578ankyrin repeat family protein, putative
LOC_Os11g09230OsAffx.30896.1.S1_at11/1111+4941971..4943680expressed protein
LOC_Os11g09230Os.51889.1.S1_x_at2/1111+4941971..4943680expressed protein
LOC_Os11g09240OsAffx.22492.1.S1_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified
LOC_Os11g09240OsAffx.22492.1.S1_x_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified
LOC_Os11g09250Os.31312.5.S1_x_at5/1111+4952158..4955416retrotransposon protein, putative, unclassified
LOC_Os11g09250Os.31312.2.S1_x_at4/1111+4952158..4955416retrotransposon protein, putative, unclassified
LOC_Os11g09260Os.51889.1.S1_at11/1111+4961051..4962931expressed protein
LOC_Os11g09260Os.51889.1.S1_x_at11/1111+4961051..4962931expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30895.1.S1_at--803--1831Chr11:4937203..4937227 (25 bp)
ACGCGGTCAGGCTCGGCGACAAGCA
LOC_Os11g09220
OsAffx.30895.1.S1_at--631--8311Chr11:4937212..4937236 (25 bp)
GGCTCGGCGACAAGCAGCTCGTCGA
LOC_Os11g09220
OsAffx.30895.1.S1_at--931--1571Chr11:4937227..4937251 (25 bp)
AGCTCGTCGACCATCTGATTTCGGT
LOC_Os11g09220
OsAffx.30895.1.S1_at--979--7211Chr11:4937232..4937256 (25 bp)
GTCGACCATCTGATTTCGGTGCATC
LOC_Os11g09220
OsAffx.30895.1.S1_at--764--471Chr11:4937239..4937263 (25 bp)
ATCTGATTTCGGTGCATCCCCGGCT
LOC_Os11g09220
OsAffx.30895.1.S1_at--269--8691Chr11:4937242..4937266 (25 bp)
TGATTTCGGTGCATCCCCGGCTTGC
LOC_Os11g09220
OsAffx.30895.1.S1_at--1017--8751Chr11:4937299..4937323 (25 bp)
TGTACCTGGCGGTCTCACTGGGCCA
LOC_Os11g09220
OsAffx.30895.1.S1_at--677--9351Chr11:4937332..4937356 (25 bp)
TCGCAGAGGCTCTGCATCAGCAAGG
LOC_Os11g09220
OsAffx.30895.1.S1_at--195--8111Chr11:4937357..4937381 (25 bp)
GGACGAGCTCTCGTATGCAGGACCG
LOC_Os11g09220
OsAffx.30895.1.S1_at--485--8691Chr11:4937408..4937545 (25 bp)
TGTCCTACGCGGTGCAGAATTTTCG
LOC_Os11g09220
OsAffx.30895.1.S1_at--359--3751Chr11:4937411..4937548 (25 bp)
CCTACGCGGTGCAGAATTTTCGTTC
LOC_Os11g09220
Target Sequence 
ACGCGGTCAGGCTCGGCGACAAGCAGCTCGTCGACCATCTGATTTCGGTGCATCCCCGGCTTGCCCGTCTTCCCGGCGGC
GACGGGATGTCGCCGTTGTACCTGGCGGTCTCACTGGGCCACGACCACATCGCAGAGGCTCTGCATCAGCAAGGGGACGA
GCTCTCGTATGCAGGACCGGCCGGCCAAACTGCCCTGCACGCTGCTGTCCTACGCGGTGCAGAATTTTCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis