Browse Element(s) Details


Os.16036.1.S1_at

Description gb:AK103223.1
DB_XREF= gi:32988432
TID=Os.16036.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16036 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033123A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123A03, full insert sequence.
FL= gb:AK103223.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0918011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09160Os.52508.1.S1_at11/1111+4890449..4895673B3 DNA binding domain containing protein, expressed
LOC_Os11g09170Os.18115.1.S1_at11/1111+4914681..4919536expressed protein
LOC_Os11g09180Os.16036.1.S1_at11/1111+4919657..4921042expressed protein
LOC_Os11g09190OsAffx.18760.1.S1_at11/1111+4927791..4929665expressed protein
LOC_Os11g09200NANA11+4930463..4933361expressed protein
LOC_Os11g09210OsAffx.7051.1.S1_at10/1111+4934820..4935647hypothetical protein
LOC_Os11g09220OsAffx.30895.1.S1_at11/1111+4936761..4937578ankyrin repeat family protein, putative
LOC_Os11g09230OsAffx.30896.1.S1_at11/1111+4941971..4943680expressed protein
LOC_Os11g09230Os.51889.1.S1_x_at2/1111+4941971..4943680expressed protein
LOC_Os11g09240OsAffx.22492.1.S1_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified
LOC_Os11g09240OsAffx.22492.1.S1_x_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16036.1.S1_at--393--3491Chr11:4920222..4920246 (25 bp)
CATGGCGAGAATCCCTCTCCGTGAT
LOC_Os11g09180
Os.16036.1.S1_at--1035--2851Chr11:4920136..4920160 (25 bp)
AAGTCCATGATGATCAACACCAAGA
LOC_Os11g09180
Os.16036.1.S1_at--1156--6291Chr11:4920067..4920091 (25 bp)
GATGACCATGTTGAGCTTCTAAGAA
LOC_Os11g09180
Os.16036.1.S1_at--22--2471Chr11:4920044..4920068 (25 bp)
AACAAGATCAGGTGAGCTCAGGGAA
LOC_Os11g09180
Os.16036.1.S1_at--1119--8271Chr11:4919947..4919971 (25 bp)
GGCATCTTCAGAGATAAGGCCCTCA
LOC_Os11g09180
Os.16036.1.S1_at--285--2951Chr11:4919932..4919956 (25 bp)
AAGGCCCTCACACTGGGCTGAATTT
LOC_Os11g09180
Os.16036.1.S1_at--455--10751Chr11:4919877..4919901 (25 bp)
TTGACCTTGAGCAATCTGGAAACCA
LOC_Os11g09180
Os.16036.1.S1_at--680--2631Chr11:4919857..4919881 (25 bp)
AACCAGCAGGGTATGTATGTAACCT
LOC_Os11g09180
Os.16036.1.S1_at--843--7511Chr11:4919829..4919853 (25 bp)
GTGGATGCTAATTTGACTGATCAAT
LOC_Os11g09180
Os.16036.1.S1_at--793--6131Chr11:4919789..4919813 (25 bp)
GAGGGTTTAGAGCTTCTTGCAATGT
LOC_Os11g09180
Os.16036.1.S1_at--771--7031Chr11:4919693..4919717 (25 bp)
GTAACTTGTTTCAGTGTGACATACT
LOC_Os11g09180
Target Sequence 
CATGGCGAGAATCCCTCTCCGTGATCACCGACCGGTTCCCGAGGCGGCCGGGCGTCGCCGAGCACGAGAGGGTGGCCATG
GTGGTGAAGTCCATGATGATCAACACCAAGATGGAAGGAGAAGAAGAGACCAAAAATGGCAAACAAGAACAAGAAGATGA
CCATGTTGAGCTTCTAAGAACAAGATCAGGTGAGCTCAGGGAAGGTGTGGAGATGTTTGATTGTGTTTTGGATGAAGTGT
TTGATGAGGTGATCAAGGGCAGGAATGAGATGCTTGGCATCTTCAGAGATAAGGCCCTCACACTGGGCTGAATTTTTAGA
TGTTAGCTAATCTCTGAAAAGTTAATTGACCTTGAGCAATCTGGAAACCAGCAGGGTATGTATGTAACCTGGGGTGGATG
CTAATTTGACTGATCAATTTGAGTTGTTTTGTTGAGGGTTTAGAGCTTCTTGCAATGTGTGAGTATGTGTTTATGAAGGT
GTTTAATTATATTTGGTTTCCTTTTATACTTTAATTTCTCCTTTGGTTTGTAACTTGTTTCAGTGTGACATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis