Browse Element(s) Details


Os.50387.1.S1_at

Description gb:AK120992.1
DB_XREF= gi:37990615
TID=Os.50387.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50387 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043N15, full insert sequence.
FL= gb:AK120992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1712011/11salt tolerance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17040OsAffx.16304.1.S1_at9/117+10029164..10033007Mak16 protein
LOC_Os07g17050NANA7+10034579..10037341hypothetical protein
LOC_Os07g17060OsAffx.5351.1.S1_at11/117+10039054..10039675hypothetical protein
LOC_Os07g17060Os.52249.2.S1_x_at1/117+10039054..10039675hypothetical protein
LOC_Os07g17070NANA7+10044308..10044694hypothetical protein
LOC_Os07g17080OsAffx.22385.1.S1_x_at2/117+10045234..10046448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17080OsAffx.20329.1.S1_at1/117+10045234..10046448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17090NANA7+10046629..10049596retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17100NANA7+10049948..10050940hypothetical protein
LOC_Os07g17109NANA7+10052589..10053678NA
LOC_Os07g17120Os.50387.1.S1_at11/117+10056081..10057376salt tolerance protein, putative, expressed
LOC_Os07g17130Os.54261.1.S1_at11/117+10062512..10066307Senescence-associated, putative, expressed
LOC_Os07g17140Os.47463.1.S1_x_at6/117+10068211..10073079transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17140Os.14491.2.S1_x_at5/117+10068211..10073079transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17150NANA7+10074553..10078366transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50387.1.S1_at--384--2271Chr07:10057244..10057268 (25 bp)
AAAAATGACTTTGACCTGGGACTGA
LOC_Os07g17120
Os.50387.1.S1_at--242--2991Chr07:10057190..10057214 (25 bp)
AATGTGAGCATTGCTTCTGCTGAGA
LOC_Os07g17120
Os.50387.1.S1_at--353--5191Chr07:10057122..10057146 (25 bp)
GAATTTACCAATCAGCTTCAGGCCC
LOC_Os07g17120
Os.50387.1.S1_at--167--6551Chr07:10057094..10057118 (25 bp)
GATTTTGGCTCTGCTATGTGGGATA
LOC_Os07g17120
Os.50387.1.S1_at--1077--7071Chr07:10057022..10057046 (25 bp)
GTCAATACTCCTTTTGGACACATGA
LOC_Os07g17120
Os.50387.1.S1_at--604--3151Chr07:10056275..10056299 (25 bp)
AATTCTTTCAAGAGTGAGCCCTTTG
LOC_Os07g17120
Os.50387.1.S1_at--519--5871Chr07:10056260..10056284 (25 bp)
GAGCCCTTTGTATATGCTAGCCAAG
LOC_Os07g17120
Os.50387.1.S1_at--798--10211Chr07:10056234..10056258 (25 bp)
TATTATCTCTGCTTACACTATCTGA
LOC_Os07g17120
Os.50387.1.S1_at--626--10491Chr07:10056196..10056220 (25 bp)
TTAAACCTTGTATTCCACCATCTTT
LOC_Os07g17120
Os.50387.1.S1_at--373--9471Chr07:10056157..10056181 (25 bp)
TCTGGTCTTGTAACTATGCTCTTGT
LOC_Os07g17120
Os.50387.1.S1_at--45--4831Chr07:10056140..10056164 (25 bp)
GCTCTTGTTGGTAGTTCATTTGTCT
LOC_Os07g17120
Target Sequence 
AAAAATGACTTTGACCTGGGACTGAATTCTATGGATTATGAAGTGTGGCTCTCTAATGTGAGCATTGCTTCTGCTGAGAT
GAAAGAAACTACAAATATTAAGAAGCAGGAGGTAACAACCATGAATTTACCAATCAGCTTCAGGCCCAAGGATTTTGGCT
CTGCTATGTGGGATATGATAAGGGGAAAGGGAACTGGTTACACCATAAAGGGGCACATTGATGTCAATACTCCTTTTGGA
CACATGAAAATACCTATATGCAAAGAGGGTGGAACTACCCGCCTTAAGAAGGGAGACGATGATGACGACGACGATGACCA
GGAGTAAAAGGTGATAGGGATAGAGAATTTTCTGGAGCAGAAATTCTTTCAAGAGTGAGCCCTTTGTATATGCTAGCCAA
GTTATTATCTCTGCTTACACTATCTGATGAACATGCAAGCTTAAACCTTGTATTCCACCATCTTTTTTTTTTTCTGTATT
TCTGGTCTTGTAACTATGCTCTTGTTGGTAGTTCATTTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis