Browse Element(s) Details


Os.50394.1.S1_at

Description gb:AK121026.1
DB_XREF= gi:37990649
TID=Os.50394.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050D12, full insert sequence.
FL= gb:AK121026.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g093503/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09310NANA9+4982025..4982288hypothetical protein
LOC_Os09g09320Os.50376.2.S1_at11/119+4987979..4990687Nuclear transport factor 2 domain containing protein, expressed
LOC_Os09g09320Os.50376.1.S1_a_at10/119+4987979..4990687Nuclear transport factor 2 domain containing protein, expressed
LOC_Os09g09330Os.25163.1.A1_x_at11/119+4991064..4996394expressed protein
LOC_Os09g09330Os.53720.1.S1_at11/119+4991064..4996394expressed protein
LOC_Os09g09350Os.50394.1.S1_at3/119+5004304..5005287hypothetical protein
LOC_Os09g09360Os.52247.1.S1_at10/119+5005931..5019011expressed protein
LOC_Os09g09370Os.21811.1.S1_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed
LOC_Os09g09370OsAffx.29776.1.S1_x_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50394.1.S1_at--678--7753Chr09:5005137..5005161 (25 bp)
GGTGTTCTTGCGTACATGCGGCCTC
LOC_Os09g09350
Os.50394.1.S1_at--820--8491Chr09:5005192..5005216 (25 bp)
TGGCAGCAACAAGCGGACGCGGCCT
LOC_Os09g09350
Os.50394.1.S1_at--417--9451Chr09:5005219..5005243 (25 bp)
TCGGCAGCGGCTACCGGCGAACACG
LOC_Os09g09350
Os.50394.1.S1_at--33--6752Chr09:5005287..5005311 (25 bp)
GTTCTTGTAGTATCTGGTTCTTGCT
NONE
Os.50394.1.S1_at--605--8092Chr09:5005429..5005453 (25 bp)
GGAGCCTTGCATGCGTGTGGTATAC
NONE
Os.50394.1.S1_at--88--7871Chr09:5005447..5005471 (25 bp)
GGTATACTAGTATGTGGCCGATAAT
NONE
Os.50394.1.S1_at--38--8431Chr09:5005462..5005486 (25 bp)
GGCCGATAATTGCTTTGCATGCTGA
NONE
Os.50394.1.S1_at--30--631Chr09:5005480..5005504 (25 bp)
ATGCTGATGGATGTGGCTTTACTCG
NONE
Os.50394.1.S1_at--972--8291Chr09:5005494..5005518 (25 bp)
GGCTTTACTCGGATGCAGCTGTTAT
NONE
Os.50394.1.S1_at--1092--8191Chr09:5005540..5005564 (25 bp)
GGAAGGACAGCCACAGGGAAATTCA
NONE
Os.50394.1.S1_at--392--3471Chr09:5005553..5005577 (25 bp)
CAGGGAAATTCATGCTTGTCTTTTT
NONE
Target Sequence 
GGTGTTCTTGCGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATTGGCAGCAACAAGCGGACGCGGCCT
CGTCGGCAGCGGCTACCGGCGAACACGGCGGCGGCGACGAGCGGACACGGCCTCGTCAGGGTTCTTGCTAGTTCTTGTAG
TATCTGGTTCTTGCTAGTTCTTGTAGTATGTCTTTTTCTCTGTTCTTCATTGACAGATGCAAGGCTCCACCAGTCCACCT
CCCCGCACCTCCCTCCGTTGTGTTGGAGGCTTTGCTACGCGGCGGCGGCGGTGGAGCCTTGCATGCGTGTGGTATACTAG
TATGTGGCCGATAATTGCTTTGCATGCTGATGGATGTGGCTTTACTCGGATGCAGCTGTTATGGTGGAAGGGGATTGATG
ATGGGAAGGACAGCCACAGGGAAATTCATGCTTGTCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis