Browse Element(s) Details


Os.50410.1.S2_at

Description gb:AK101528.1
DB_XREF= gi:32986737
TID=Os.50410.1
CNT=2
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.50410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033047H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033047H19, full insert sequence.
FL= gb:AK101528.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5960011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59540Os.52597.1.S1_at11/114+35194225..35199766Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os04g59550Os.6715.1.S1_at11/114+35199872..35202466glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os04g59560Os.49141.1.S1_at10/114+35203978..35207760CAP-Gly domain containing protein, expressed
LOC_Os04g59570Os.5577.2.S1_a_at11/114+35207902..35210490expressed protein
LOC_Os04g59570Os.5577.2.S1_at11/114+35207902..35210490expressed protein
LOC_Os04g59580Os.48291.1.S1_at11/114+35211264..35213719Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g59590Os.53076.1.S1_at11/114+35215925..35220062dehydration-responsive protein, putative, expressed
LOC_Os04g59600Os.50410.1.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.2.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S1_x_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S2_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59610Os.52938.1.S1_a_at11/114+35224850..35226493expressed protein
LOC_Os04g59620OsAffx.14482.1.S1_at11/114+35226841..35240731SNF2 family N-terminal domain containing protein, expressed
LOC_Os04g59630NANA4+35243473..35244021expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50410.1.S2_at--304--3092Chr05:7760527..7760551 (25 bp)
AATAACCCTTCGATTCATCTTCTTG
NONE
Os.50410.1.S2_at--380--2272Chr05:7760575..7760599 (25 bp)
AAATCTATCCCCTCTGTGAGGCGTC
NONE
Os.50410.1.S2_at--692--9232Chr05:7760598..7760623 (25 bp)
TCCATGGCAGCTTTGAATCTCGAAA
NONE
Os.50410.1.S2_at--808--2812Chr05:7760672..7760696 (25 bp)
AAGATTCCAGCATGCAGCCGTCAAA
NONE
Os.50410.1.S2_at--997--1652Chr05:7760687..7760711 (25 bp)
AGCCGTCAAATCCTTGCTCAACGAT
NONE
Os.50410.1.S2_at--342--6512Chr05:7760709..7760733 (25 bp)
GATATGTATGATCTCAACCTCAGGA
NONE
Os.50410.1.S2_at--845--91Chr04:35223303..35223327 (25 bp)
ATTCCGATCGGATATGCCTTTGATG
LOC_Os04g59600
Os.50410.1.S2_at--108--812Chr05:7760852..7760876 (25 bp)
ATGGGCAAGAACTCTTCTCTCTACA
NONE
Os.50410.1.S2_at--1021--9852Chr05:7760873..7760897 (25 bp)
TACAGAGTCAGGTACACTGCGCCGC
NONE
Os.50410.1.S2_at--1071--1732Chr05:7760988..7761012 (25 bp)
ACCTTGAGGCGTGACATGCCACTGG
NONE
Os.50410.1.S2_at--694--8691Chr04:35223553..35223577 (25 bp)
TGTGCTATCTCTGTCGCCAAACATG
LOC_Os04g59600
Target Sequence 
AATAACCCTTCGATTCATCTTCTTGTCTCCCGTTCAACCACTTTCCCCAAATCTATCCCCTCTGTGAGGCGTCCATGGCA
GCTTTGAATCTCGAAAAATAAAACAATGCTCGACGGAGATGGCCGCTAGAAATTAAGATTAATCAAGATTCCAGCATGCA
GCCGTCAAATCCTTGCTCAACGATATGTATGATCTCAACCTCAGGATCTTTGGGTTGATTGCATGATATATATGGCATGC
CAAAATTTCGAATCAAACAAGAAATTCCGATCGGATATGCCTTTGATGCACACATCTGCAACCCCCGGGCAAAGACTCAT
CCATTCCATCCCATGGGCAAGAACTCTTCTCTCTACAGAGTCAGGTACACTGCGCCGCAGCTGCTCCATCGGCCGAACAC
CATGGCCGTCGCCCTGGACACGCTCGCCCGCGCATCGTCCCTCTCCAACAAGCTGGACAACCACACGCACCTTGAGGCGT
GACATGCCACTGGCCGCGCCGCCGCGCTCTGGATGTGCTATCTCTGTCGCCAAACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50410.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis