Browse Element(s) Details


Os.50440.1.S1_at

Description gb:AK121203.1
DB_XREF= gi:37990826
TID=Os.50440.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087N07, full insert sequence.
FL= gb:AK072704.1 gb:AK121203.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3172010/11zinc finger and C2 domain protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31690Os.55351.1.S1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.25394.1.A1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.55351.1.S1_x_at8/115+18367037..18370882expressed protein
LOC_Os05g31700NANA5+18375781..18375993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g31710Os.54537.1.S1_at11/115+18382240..18383634expressed protein
LOC_Os05g31720Os.50440.1.S1_at10/115+18385822..18389490zinc finger and C2 domain protein, putative, expressed
LOC_Os05g31730OsAffx.4492.1.S1_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31730OsAffx.4492.1.S1_x_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31740Os.54911.1.S1_at11/115+18406188..18408080Cytochrome P450 family protein, expressed
LOC_Os05g31750Os.22783.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31750Os.38017.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005543molecular_functionphospholipid binding
GO:0008060molecular_functionARF GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50440.1.S1_at--883--2211Chr05:18388950..18388974 (25 bp)
ACAAGGACACGTTCAGCTCCGACGA
LOC_Os05g31720
Os.50440.1.S1_at--886--8451Chr05:18389100..18389124 (25 bp)
TGGCCAGGGACAGCGTCATCTCCGT
LOC_Os05g31720
Os.50440.1.S1_at--875--951Chr05:18389145..18389169 (25 bp)
AGGACATCGCGCTGAGGCTCCAGAA
LOC_Os05g31720
Os.50440.1.S1_at--302--7291Chr05:18389207..18389231 (25 bp)
GTGCCGCTCAGCCAGTAGTATAGCT
LOC_Os05g31720
Os.50440.1.S1_at--539--4871Chr05:18389229..18389253 (25 bp)
GCTATAGCTGCTGTACACATTTTAT
LOC_Os05g31720
Os.50440.1.S1_at--224--9091Chr05:18389254..18389278 (25 bp)
TGCTACTATAGCTGGCCGGGATGAA
LOC_Os05g31720
Os.50440.1.S1_at--195--2291Chr05:18389279..18389303 (25 bp)
AAATGCTCGATCTGCATTCGCTGTG
LOC_Os05g31720
Os.50440.1.S1_at--399--211Chr05:18389332..18389356 (25 bp)
ATTTGCTTCTGTGTTTTACTCCATG
LOC_Os05g31720
Os.50440.1.S1_at--324--1991Chr05:18389349..18389373 (25 bp)
ACTCCATGCCTGTATACTTTGTCAA
LOC_Os05g31720
Os.50440.1.S1_at--629--6131Chr05:18389387..18389411 (25 bp)
GAGGGCTTAATGTTCATGTCATCGT
LOC_Os05g31720
Os.50440.1.S1_at--752--10091Chr05:18389484..18389508 (25 bp)
TAGGCTTCAATGTTGGTTTTGGCTG
NONE
Target Sequence 
ACAAGGACACGTTCAGCTCCGACGACCGGATGGGCGATGTGGAGGTGGACATCCAGCCGCTGATCGCCGCGGCGCGAGAA
CACGAGAGCTCGGCCGCCATCGCCGGCTCGGTGGAGGTCACGAAGCTGCTGGCGAGCGACGACGGCACGCTGGCCAGGGA
CAGCGTCATCTCCGTCGTCGACGGCAAGGTGAAGCAGGACATCGCGCTGAGGCTCCAGAACGTGGAGCACGGGGAGCTGG
AGATCGAGCTCGAGTGCGTGCCGCTCAGCCAGTAGTATAGCTATAGCTGCTGTACACATTTTATTGCTACTATAGCTGGC
CGGGATGAAAAATGCTCGATCTGCATTCGCTGTGGGTTGTGTGATCATATGCATGGAGCTTAATTTGCTTCTGTGTTTTA
CTCCATGCCTGTATACTTTGTCAAGTTGTGTCATGTTGAGGGCTTAATGTTCATGTCATCGTGTATTAATTAGATATGGT
TTGTATAGGTAGGAAATTAAGGGGGAAATGGATCGTCTAAAACAACTCTAATTTTAGGCTTCAATGTTGGTTTTGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis