Browse Element(s) Details


Os.50458.1.S1_at

Description gb:AK069882.1
DB_XREF= gi:32979906
TID=Os.50458.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035P09, full insert sequence.
FL= gb:AK069882.1 gb:AK121270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3730011/11Sodium/hydrogen exchanger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37260OsAffx.18025.1.S1_at11/119+21523888..21525085hypothetical protein
LOC_Os09g37270Os.10858.1.S1_at11/119+21525495..21529378pollen-specific kinase partner protein, putative, expressed
LOC_Os09g37280Os.8278.1.S1_at10/119+21537399..21542468MaoC like domain containing protein, expressed
LOC_Os09g37290OsAffx.30166.1.S1_at11/119+21543393..21543697hypothetical protein
LOC_Os09g37300Os.50458.1.S1_at11/119+21543867..21546744Sodium/hydrogen exchanger family protein, expressed
LOC_Os09g37300OsAffx.11114.1.S1_x_at1/119+21543867..21546744Sodium/hydrogen exchanger family protein, expressed
LOC_Os09g37300OsAffx.11114.1.S1_at1/119+21543867..21546744Sodium/hydrogen exchanger family protein, expressed
LOC_Os09g37310OsAffx.382.1.S1_at2/119+21550279..21556824retrotransposon protein, putative, unclassified
LOC_Os09g37310OsAffx.21756.1.S1_at1/119+21550279..21556824retrotransposon protein, putative, unclassified
LOC_Os09g37320NANA9+21558741..21563666retrotransposon protein, putative, unclassified
LOC_Os09g37330Os.39652.1.S1_at11/119+21565259..21565999auxin induced protein, putative, expressed
LOC_Os09g37340NANA9+21567180..21567572hypothetical protein
LOC_Os09g37350NANA9+21568985..21569401auxin induced protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50458.1.S1_at--542--4211Chr09:21544423..21544447 (25 bp)
CCGCCAATCACATCGGCATCTACGA
LOC_Os09g37300
Os.50458.1.S1_at--619--9111Chr09:21544366..21544390 (25 bp)
TGCTGTCCGTGGTGGTTCAAGACGA
LOC_Os09g37300
Os.50458.1.S1_at--553--8691Chr09:21544363..21544387 (25 bp)
TGTCCGTGGTGGTTCAAGACGACGA
LOC_Os09g37300
Os.50458.1.S1_at--61--1611Chr09:21544315..21544339 (25 bp)
AGCTGCGGCGCGAGTACGTGGCGAA
LOC_Os09g37300
Os.50458.1.S1_at--538--3431Chr09:21544139..21544163 (25 bp)
CAGATGATCGAGTACCCGGAGGTGG
LOC_Os09g37300
Os.50458.1.S1_at--254--10331Chr09:21544025..21544049 (25 bp)
TTTCATCTCAACATTCCGCCGGCGA
LOC_Os09g37300
Os.50458.1.S1_at--482--3931Chr09:21544006..21544030 (25 bp)
CGGCGATCTGACACGCTACATACAA
LOC_Os09g37300
Os.50458.1.S1_at--534--5631Chr09:21543997..21544021 (25 bp)
GACACGCTACATACAAAACGTACAA
LOC_Os09g37300
Os.50458.1.S1_at--309--7451Chr09:21543958..21543982 (25 bp)
GTGTAAGGATTATTATAGCTGTGTA
LOC_Os09g37300
Os.50458.1.S1_at--354--3891Chr09:21543940..21543964 (25 bp)
CTGTGTATATTTAGAGCGTGGTAGA
LOC_Os09g37300
Os.50458.1.S1_at--832--4651Chr09:21543925..21543949 (25 bp)
GCGTGGTAGAAGACTAGATCAAATT
LOC_Os09g37300
Target Sequence 
CCGCCAATCACATCGGCATCTACGACGACGACGACGAGGACGGCGGCGAGGAGGAGGTGCTGTCCGTGGTGGTTCAAGAC
GACGACCCCGACGAGCGGTGCGTGTCGGAGCTGCGGCGCGAGTACGTGGCGAAGGAGCGCGCGGAGTACGTGGAGAGGGC
GGTGAGCGGGGCGGTGGACGTGGCGGCGGCGTTGCGCGCGACGGCGGGGGCGTTCGCGCTCGTGGTGGTGGGGCGCGGCG
GGCGGCAGCCGCCGGAGCTGGNGGTGGGGCTCGAGGGGTGGGTCCAGATGATCGAGTACCCGGAGGTGGGCCCGGTCGGG
GAGATGCTCGCGTCGGAGGAGTCGCTGGAGATGGGCTCCGTGCTCGTCGTGCAGCAGAGGACGGCGCCGCCGCCGCCGTT
TCATCTCAACATTCCGCCGGCGATCTGACACGCTACATACAAAACGTACAAAAAAAATTAAATCAGTGTAAGGATTATTA
TAGCTGTGTATATTTAGAGCGTGGTAGAAGACTAGATCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis