Browse Element(s) Details


Os.50480.1.S1_at

Description gb:AK121367.1
DB_XREF= gi:37990990
TID=Os.50480.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023125F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023125F18, full insert sequence.
FL= gb:AK121367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7130011/11Esterase D, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71240Os.34808.1.S1_at11/111+41546886..41554183Calcium-transporting ATPase 11, plasma membrane-type, putative, expressed
LOC_Os01g71250Os.28979.2.S1_x_at11/111+41554233..41556655expressed protein
LOC_Os01g71250Os.28979.1.S1_at11/111+41554233..41556655expressed protein
LOC_Os01g71256Os.33291.1.S1_a_at10/111+41557703..41562435expressed protein
LOC_Os01g71262Os.55362.1.S1_at11/111+41563261..41565644expressed protein
LOC_Os01g71270Os.48006.1.S1_at11/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71270Os.12402.2.S1_x_at1/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71280Os.11390.1.S1_at10/111+41572437..41576747Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g71300Os.57405.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.57001.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.50480.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.18519.1.S1_at10/111+41578082..41599153Esterase D, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50480.1.S1_at--651--8571Chr01:41591673..41591697 (25 bp)
TGGTTTCCCCGTAGGACATTTGTAT
LOC_Os01g71300
Os.50480.1.S1_at--50--6551Chr01:41591733..41591757 (25 bp)
GATTTTCTACAAGATGGTCTATGCT
LOC_Os01g71300
Os.50480.1.S1_at--766--6251Chr01:41591745..41591769 (25 bp)
GATGGTCTATGCTTTTATCTAAAAA
LOC_Os01g71300
Os.50480.1.S1_at--735--2254Chr01:41591771..41591795 (25 bp)
AAATATTGCCTTGGTTTCATGCTTC
LOC_Os01g71300
Os.50480.1.S1_at--1110--3831Chr01:41591806..41591830 (25 bp)
CTGAAGTCTTTAGCTTGAACTTGAA
LOC_Os01g71300
Os.50480.1.S1_at--336--5492Chr01:41591865..41591889 (25 bp)
GAACATTCTCTTTGTTTCATGCATG
LOC_Os01g71300
Os.50480.1.S1_at--515--6271Chr01:41591951..41591975 (25 bp)
GATGTTTCGTTTTGTGTCCTTCGTT
LOC_Os01g71300
Os.50480.1.S1_at--693--8671Chr01:41591963..41591987 (25 bp)
TGTGTCCTTCGTTAGTATTCTCGTT
LOC_Os01g71300
Os.50480.1.S1_at--1011--2971Chr01:41591991..41592015 (25 bp)
AATGTTTTAACGCTTCTATTCGTGG
LOC_Os01g71300
Os.50480.1.S1_at--398--6752Chr01:41592017..41592041 (25 bp)
GTCTAAAGCTTTCACTTTGTACCTC
LOC_Os01g71300
Os.50480.1.S1_at--507--3551Chr01:41592039..41592063 (25 bp)
CTCTAATTCTAATGGGTTTTCCAAG
LOC_Os01g71300
Target Sequence 
TGGTTTCCCCGTAGGACATTTGTATTTAGTTTTTAGTTCTTTTACTTGGTACTTACTATTGATTTTCTACAAGATGGTCT
ATGCTTTTATCTAAAAAAAAATATTGCCTTGGTTTCATGCTTCCATTTATATTCTGAAGTCTTTAGCTTGAACTTGAATT
TTGGAATTTGATGTTGTTTCCTTTTATCAATGGAACATTCTCTTTGTTTCATGCATGGTGCTTCTACTCGGATTCTAAAT
CTTTTATCATTGTACTTACTATTAGATTTTTGGAGTTTGATGTTTCGTTTTGTGTCCTTCGTTAGTATTCTCGTTTTTAA
TGTTTTAACGCTTCTATTCGTGGAGTCTAAAGCTTTCACTTTGTACCTCTAATTCTAATGGGTTTTCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis