Browse Element(s) Details


Os.50488.1.S1_at

Description gb:AK121405.1
DB_XREF= gi:37991028
TID=Os.50488.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132G13, full insert sequence.
FL= gb:AK121405.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1395011/11NHL repeat-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13920OsAffx.13875.1.S1_at1/112+7578016..7579076retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g13930OsAffx.2603.1.S1_at11/112+7582245..7586531expressed protein
LOC_Os02g13930OsAffx.15672.1.S1_x_at1/112+7582245..7586531expressed protein
LOC_Os02g13940NANA2+7591255..7591569hypothetical protein
LOC_Os02g13950Os.50488.1.S1_at11/112+7594952..7599868NHL repeat-containing protein, putative, expressed
LOC_Os02g13960Os.5133.1.S1_at11/112+7613140..7615367U-box domain containing protein, expressed
LOC_Os02g13970Os.26931.1.S1_a_at11/112+7621905..7627260UOS1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50488.1.S1_at--27--1131Chr02:7599321..7599345 (25 bp)
AGTGAAGCCCGCAGACTACAGTGAC
LOC_Os02g13950
Os.50488.1.S1_at--299--811Chr02:7599510..7599534 (25 bp)
ATGGGTCATTTTCTCACCAGTTGTA
LOC_Os02g13950
Os.50488.1.S1_at--788--9851Chr02:7599590..7599614 (25 bp)
TATCAATTTGGCATCCGGAATCCCT
LOC_Os02g13950
Os.50488.1.S1_at--198--5571Chr02:7599655..7599679 (25 bp)
GAAAGCAACCCGTAGCCTGGTAGTA
LOC_Os02g13950
Os.50488.1.S1_at--667--6411Chr02:7599685..7599709 (25 bp)
GATCTGCTCAATACCTTTCATGTTG
LOC_Os02g13950
Os.50488.1.S1_at--22--9631Chr02:7599702..7599726 (25 bp)
TCATGTTGCATGCTTGAGCTCTGGT
LOC_Os02g13950
Os.50488.1.S1_at--326--1591Chr02:7599718..7599742 (25 bp)
AGCTCTGGTCTTGCCATGTTATGTT
LOC_Os02g13950
Os.50488.1.S1_at--536--7331Chr02:7599753..7599777 (25 bp)
GTGCATGGGCCATCTGTCATGACAG
LOC_Os02g13950
Os.50488.1.S1_at--209--8231Chr02:7599777..7599801 (25 bp)
GGCAAGTCCAATGTCAAACCAGCTG
LOC_Os02g13950
Os.50488.1.S1_at--493--571Chr02:7599815..7599839 (25 bp)
ATCCTAGTTCTCCTTGAGCTGTCAA
LOC_Os02g13950
Os.50488.1.S1_at--392--2871Chr02:7599843..7599867 (25 bp)
AAGTGAGGTCTCATTCTTCTCTCTT
LOC_Os02g13950
Target Sequence 
AGTGAAGCCCGCAGACTACAGTGACCCAAAGTATGATCCCTACAACATCAGAAGCAAATATGGTGCTGACAGCGGCTACA
GGTACTGATGCCCCGTTCCTGCCATCGTTCGGCATCTATCTACCCCCAGTGTACTGATATCAACTTCCATTAGTCGTTGT
GCAAAAGCACAAAGCTGCTGCCGGTGCTTATGGGTCATTTTCTCACCAGTTGTAACCACCCATAAGATGAGATGCGGCAG
ATGGTCATTCTAGTTAGGTGGTGATCCTATATCAATTTGGCATCCGGAATCCCTCTATGCGGTTCAGGGGAAAGCCAAAA
TGTAATTTCGCGCAGAAAGCAACCCGTAGCCTGGTAGTAATTTTGATCTGCTCAATACCTTTCATGTTGCATGCTTGAGC
TCTGGTCTTGCCATGTTATGTTACAGCCTGTGGTGCATGGGCCATCTGTCATGACAGGCAAGTCCAATGTCAAACCAGCT
GAAATGCAGCTCCTATCCTAGTTCTCCTTGAGCTGTCAATGAAAGTGAGGTCTCATTCTTCTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis