Browse Element(s) Details


Os.50497.1.S1_at

Description gb:AK121455.1
DB_XREF= gi:37991078
TID=Os.50497.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142P15, full insert sequence.
FL= gb:AK121455.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2042011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20360Os.27435.1.S1_x_at5/114+11370808..11372988hypothetical protein
LOC_Os04g20360Os.46334.1.S1_x_at4/114+11370808..11372988hypothetical protein
LOC_Os04g20370NANA4+11374236..11375429transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20380NANA4+11377926..11378212hypothetical protein
LOC_Os04g20390OsAffx.22421.1.S1_at4/114+11378755..11382002transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20390OsAffx.22421.4.S1_x_at2/114+11378755..11382002transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20390Os.26886.3.S1_x_at1/114+11378755..11382002transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20390OsAffx.22421.2.S1_at1/114+11378755..11382002transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20400Os.52956.1.S1_at2/114+11384256..11385551Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os04g20410OsAffx.24477.2.S1_at10/114+11391620..11394147hypothetical protein
LOC_Os04g20420Os.50497.1.S1_at11/114+11396708..11398304expressed protein
LOC_Os04g20420OsAffx.26590.1.S1_at1/114+11396708..11398304expressed protein
LOC_Os04g20430OsAffx.13887.1.S1_at11/114+11408189..11408998hypothetical protein
LOC_Os04g20440NANA4+11411611..11414915transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20450NANA4+11416311..11418641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20460Os.47463.1.S1_x_at6/114+11419103..11421275transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20460Os.14491.2.S1_x_at4/114+11419103..11421275transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50497.1.S1_at--1031--7231Chr04:11397170..11397194 (25 bp)
GTCGCCGACCGGAAGTACCATGCCA
LOC_Os04g20420
Os.50497.1.S1_at--733--5811Chr04:11397164..11397188 (25 bp)
GACCGGAAGTACCATGCCATCTTCC
LOC_Os04g20420
Os.50497.1.S1_at--1074--2591Chr04:11397056..11397080 (25 bp)
AACCGCACAGTCACCTGGGTGGACT
LOC_Os04g20420
Os.50497.1.S1_at--213--5011Chr04:11396970..11396994 (25 bp)
GCAGGCCATCCGCAACAACGGGACG
LOC_Os04g20420
Os.50497.1.S1_at--17--4131Chr04:11396960..11396984 (25 bp)
CGCAACAACGGGACGCGCTGCGCGT
LOC_Os04g20420
Os.50497.1.S1_at--740--1831Chr04:11396849..11396873 (25 bp)
ACGCTCCTCGAATTCTGACATTTTT
LOC_Os04g20420
Os.50497.1.S1_at--660--1611Chr04:11396789..11396813 (25 bp)
AGCTGATCGATGGATGATTCCTTCC
LOC_Os04g20420
Os.50497.1.S1_at--308--6571Chr04:11396774..11396798 (25 bp)
GATTCCTTCCATGTAAATTTCTGTC
LOC_Os04g20420
Os.50497.1.S1_at--393--3631Chr04:11396769..11396793 (25 bp)
CTTCCATGTAAATTTCTGTCTGTCA
LOC_Os04g20420
Os.50497.1.S1_at--833--8711Chr04:11396749..11396773 (25 bp)
TGTCATCCCGACTATCCTTAATTCT
LOC_Os04g20420
Os.50497.1.S1_at--580--10291Chr04:11396718..11396742 (25 bp)
TTTGCCTCAAAATGAATATACCTCA
LOC_Os04g20420
Target Sequence 
GTCGCCGACCGGAAGTACCATGCCATCTTCCGCAAGCACTGCACGCCGTCGTGCTACCCGGACGAGCACTACATCCCGAC
GTACCTGCACCTCCGCCACGGCGCGCGCAACGCCAACCGCACAGTCACCTGGGTGGACTGGTCGCGCGGCGGGCCGCACC
CCGCGCGGTTCGGCAAGGCCACCGTCACGCCGGCGTTCGTGCAGGCCATCCGCAACAACGGGACGCGCTGCGCGTACAAC
GGCAAGCCCACCACCGTGTGCTACCTGTTCGCCCGCAAGTTCGCGCCCAGCGCGCTCGGGCCGCTGCTCAACATGTCCAC
CACGCTCCTCGAATTCTGACATTTTTTTTTTGTACTTCTCCGGTACTACTAGTAGTTTGTTAGCTGATCGATGGATGATT
CCTTCCATGTAAATTTCTGTCTGTCATCCCGACTATCCTTAATTCTCCCAAATTTGCCTCAAAATGAATATACCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis