Browse Element(s) Details


Os.50503.1.S2_at

Description gb:AK107027.1
DB_XREF= gi:32992236
TID=Os.50503.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-A08, full insert sequence.
FL= gb:AK107027.1 gb:AK121484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0436011/11phosphate:H+ symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04320Os.53344.1.S1_at10/113+1969707..1975130hypothetical protein
LOC_Os03g04330OsAffx.24961.1.S1_at11/113+1976054..1976536hypothetical protein
LOC_Os03g04340Os.6433.1.S1_at11/113+1982232..198409524-methylenesterol C-methyltransferase 2, putative, expressed
LOC_Os03g04350OsAffx.24962.1.S1_at11/113+1987355..1987722hypothetical protein
LOC_Os03g04350Os.25910.1.S1_s_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04350OsAffx.16321.1.S1_x_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04360Os.50503.1.S1_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360Os.50503.1.S2_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.20487.1.S1_s_at3/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.11592.1.S1_x_at2/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04370Os.55093.1.S1_at11/113+1993159..1993854expressed protein
LOC_Os03g04380Os.51396.1.S1_at11/113+1994068..1994713Complex 1 protein containing protein, expressed
LOC_Os03g04390Os.49142.1.S1_at11/113+1994759..1997434pentatricopeptide, putative, expressed
LOC_Os03g04400Os.47349.1.S1_at9/113+1997847..2001075DnaJ domain containing protein, expressed
LOC_Os03g04410Os.7192.1.S1_at11/113+2005928..2012682Aconitate hydratase, cytoplasmic, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50503.1.S2_at--1050--5871Chr03:1990628..1990652 (25 bp)
GAGCGATCTCTCCTCCAAAAAACAA
LOC_Os03g04360
Os.50503.1.S2_at--391--7051Chr03:1990544..1990568 (25 bp)
GTAACAACACTCACTTGACAGGCCT
LOC_Os03g04360
Os.50503.1.S2_at--248--8951Chr03:1990529..1990553 (25 bp)
TGACAGGCCTGGAGAAAGCCCCACA
LOC_Os03g04360
Os.50503.1.S2_at--339--10291Chr03:1990431..1990455 (25 bp)
TTTCCTTGACACTGACACTGCATGG
LOC_Os03g04360
Os.50503.1.S2_at--418--9051Chr03:1990413..1990437 (25 bp)
TGCATGGCACAGTGACACCTGCTAC
LOC_Os03g04360
Os.50503.1.S2_at--77--1771Chr03:1990397..1990421 (25 bp)
ACCTGCTACCATGTCTCAGAAGGGA
LOC_Os03g04360
Os.50503.1.S2_at--263--5931Chr03:1990347..1990371 (25 bp)
GAGCAGTTCAGTTTAACCTGTTCTT
LOC_Os03g04360
Os.50503.1.S2_at--465--6731Chr03:1990328..1990352 (25 bp)
GTTCTTGGCTTTTGGCGATGATCAT
LOC_Os03g04360
Os.50503.1.S2_at--199--5371Chr03:1990291..1990315 (25 bp)
GAAGAGAATTCTTTTTCCCTCCAGC
LOC_Os03g04360
Os.50503.1.S2_at--930--731Chr03:1990263..1990287 (25 bp)
ATGTTACACGCAGTTCTGGTTCCTT
LOC_Os03g04360
Os.50503.1.S2_at--383--4891Chr03:1990224..1990248 (25 bp)
GCTTCATTTCCAACCACTTTAACAA
LOC_Os03g04360
Target Sequence 
GAGCGATCTCTCCTCCAAAAAACAAAACAGAATGCATCTCTCTATAATCAAAAGGAAAAGATATTTGGTAGTAACAAGTA
CTTCGTAACAACACTCACTTGACAGGCCTGGAGAAAGCCCCACACTGCCCCAGGCCCAACACGGGGCTTCTATTCGGGCC
GGCCTCGCCCAACTCCACACCAGGCCCAACTGCCGCGTTTCCTTGACACTGACACTGCATGGCACAGTGACACCTGCTAC
CATGTCTCAGAAGGGAGCAGAGCCGTTTTTTTGGAAGGGGAGAGCAGTTCAGTTTAACCTGTTCTTGGCTTTTGGCGATG
ATCATGATCACCAACAGGAAGAGAATTCTTTTTCCCTCCAGCGACATGTTACACGCAGTTCTGGTTCCTTGGCTCCCATC
TGGAGCTTCATTTCCAACCACTTTAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50503.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis