Browse Element(s) Details


Os.50512.1.S1_at

Description gb:AK121549.1
DB_XREF= gi:37991172
TID=Os.50512.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032O05, full insert sequence.
FL= gb:AK121549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0308010/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03040Os.35020.1.S1_at7/1112+1138155..1140227NAC domain transcription factor, putative, expressed
LOC_Os12g03050OsAffx.31559.1.S1_at11/1112+1146065..1147587No apical meristem protein, expressed
LOC_Os12g03060Os.37912.1.S1_at11/1112+1150632..1154729expressed protein
LOC_Os12g03070Os.10524.2.S1_at11/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03070Os.10524.1.S1_x_at10/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03080Os.50512.1.S1_at10/1112+1157566..1164277NB-ARC domain containing protein, expressed
LOC_Os12g03090Os.9193.1.S1_s_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03090Os.37737.1.S1_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03100Os.15794.1.S1_at11/1112+1171749..1174786secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os12g03110Os.16784.1.S1_at8/1112+1179462..1180200ZF-HD protein dimerisation region containing protein
LOC_Os12g03120OsAffx.19462.1.S1_at11/1112+1182405..1182748hypothetical protein
LOC_Os12g03130Os.48443.1.S1_at11/1112+1188043..1190508CDC45-like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50512.1.S1_at--649--2471Chr12:1158938..1158962 (25 bp)
AACACCTTACTTCTCTTCAGCATTT
LOC_Os12g03080
Os.50512.1.S1_at--1054--6531Chr12:1158910..1158934 (25 bp)
GATTAGTTACAACCCTACCTTGAGT
LOC_Os12g03080
Os.50512.1.S1_at--220--7191Chr12:1158867..1158891 (25 bp)
GTCGGGAAGGACTGGCACATCATCT
LOC_Os12g03080
Os.50512.1.S1_at--276--9611Chr12:1158848..1158872 (25 bp)
TCATCTCCCATATTCCTGTTGTGGA
LOC_Os12g03080
Os.50512.1.S1_at--327--10071Chr12:1158813..1158837 (25 bp)
TAGGGAGCATGCTGGGCACTAACAA
LOC_Os12g03080
Os.50512.1.S1_at--337--2191Chr12:1157735..1157759 (25 bp)
AAAGAACTGGGCTCTTCCTGGGAAT
LOC_Os12g03080
Os.50512.1.S1_at--447--2471Chr12:1157685..1157709 (25 bp)
AACACTAGCCTGGAGTTTGTACTTG
LOC_Os12g03080
Os.50512.1.S1_at--781--1291Chr12:1157618..1157642 (25 bp)
AGATGCACTGTTCATTTGGTCCTTG
LOC_Os12g03080
Os.50512.1.S1_at--453--7791Chr12:1157601..1157625 (25 bp)
GGTCCTTGTTTACCGAACATTCTGC
LOC_Os12g03080
Os.50512.1.S1_at--487--2511Chr12:1157586..1157610 (25 bp)
AACATTCTGCAGTAAGCTTCTTTTA
LOC_Os12g03080
Os.50512.1.S1_at--448--4911NONE
GCTTCTTTTACCAGAGACGTGATTG
NONE
Target Sequence 
AACACCTTACTTCTCTTCAGCATTTGGTGATTAGTTACAACCCTACCTTGAGTAGGCATTACAAAAATAGGGTCGGGAAG
GACTGGCACATCATCTCCCATATTCCTGTTGTGGAGATACGAGATTAGGGAGCATGCTGGGCACTAACAACAAATAAACG
AGCATGGCAAGAACCCCCTGCTGGTGGAGTCGTGGAGCAGAGCATATGTGTTCATGAACCAGCTTTGGAGATGATCACTC
TCAAGTTTTGAATCTTGACATGCAAGGAAAGATGGATAAGGGTCAGGGCATTTGAATTAGCCTGATGATCAACATAAGAA
AATCTGCATGAGATGAACAGAATGTACTCGACAAAGAACTGGGCTCTTCCTGGGAATACATCTGTTTTGTTATTTTGATA
TTAACACTAGCCTGGAGTTTGTACTTGTGAAGAGAAGCCAGGGAGTTGATATACGAACTTATCATTTAAAGATGCACTGT
TCATTTGGTCCTTGTTTACCGAACATTCTGCAGTAAGCTTCTTTTACCAGAGACGTGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis