Browse Element(s) Details


Os.50534.1.S1_at

Description gb:AK121649.1
DB_XREF= gi:37991272
TID=Os.50534.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060H09, full insert sequence.
FL= gb:AK121649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3353011/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33490OsAffx.14113.1.S1_s_at11/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33490OsAffx.14113.1.S1_at8/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33500NANA4+20072158..20075122Protein kinase domain containing protein
LOC_Os04g33510Os.5803.1.S1_at10/114+20088776..20092096expressed protein
LOC_Os04g33520Os.49614.1.S1_at11/114+20092973..20094589Root cap family protein, expressed
LOC_Os04g33530Os.50534.1.S1_at11/114+20096126..20098023Ser/Thr protein phosphatase family protein, expressed
LOC_Os04g33540OsAffx.14114.1.S1_at11/114+20098703..20099584hypothetical protein
LOC_Os04g33540OsAffx.27050.1.S1_x_at4/114+20098703..20099584hypothetical protein
LOC_Os04g33550OsAffx.3985.1.S1_at11/114+20103502..20104006hypothetical protein
LOC_Os04g33560OsAffx.14115.1.S1_at11/114+20117176..20118793expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50534.1.S1_at--800--4451Chr04:20096754..20096872 (25 bp)
GCCTACGAACGCTTCACAAGGGTAT
LOC_Os04g33530
Os.50534.1.S1_at--84--5451Chr04:20096716..20096740 (25 bp)
GAACCCGTGTGGACCGGTGCACATC
LOC_Os04g33530
Os.50534.1.S1_at--666--7331Chr04:20096700..20096724 (25 bp)
GTGCACATCACCATAGGCGACGGCG
LOC_Os04g33530
Os.50534.1.S1_at--130--2951Chr04:20096579..20096690 (25 bp)
AAGGCCTCGCATTTGACTTTCGGAA
LOC_Os04g33530
Os.50534.1.S1_at--895--2591Chr04:20096343..20096367 (25 bp)
AACGACGAGTTGTAGCATTGCACAT
LOC_Os04g33530
Os.50534.1.S1_at--1129--4551Chr04:20096285..20096309 (25 bp)
GCGCTCTTAATTTGCTTGTCACGTG
LOC_Os04g33530
Os.50534.1.S1_at--11--7331Chr04:20096257..20096281 (25 bp)
GTGAACCTGGGTGCTTACTTTACGG
LOC_Os04g33530
Os.50534.1.S1_at--474--3451Chr04:20096195..20096219 (25 bp)
CAGTAGTGCTTAGGCCGGCGGCATT
LOC_Os04g33530
Os.50534.1.S1_at--446--10291Chr04:20096172..20096196 (25 bp)
TTTGCCGTGCCTCTGATAGCTAGAA
LOC_Os04g33530
Os.50534.1.S1_at--1159--5431Chr04:20096150..20096174 (25 bp)
GAACGAACAACTTCTGTGCCTGTTT
LOC_Os04g33530
Os.50534.1.S1_at--275--3891Chr04:20096137..20096161 (25 bp)
CTGTGCCTGTTTGTGGGTGTAATCA
LOC_Os04g33530
Target Sequence 
GCCTACGAACGCTTCACAAGGGTATATAACAACGAGGCGAACCCGTGTGGACCGGTGCACATCACCATAGGCGACGGCGG
CAACAGGGAAGGCCTCGCATTTGACTTTCGGAAGAACCACAAGCTGGCGCCGCTCTCGTTGATGAGGGAGGCGAGCTTCG
GGCACGGGCGGCTGAGCGTGGTGAACGCGACCGCCGCGCGCTGGACGTGGCACCGCAACGACGACGCCGACTCCACCGTG
CGCGACGAGATCTGGCTGGAGAGCCTGGCTGCCAACGGCGCGTGCCAGCAGAGTAGCAGCGCCGCCGCCGCCGCGGACTC
TCAGAACGACGAGTTGTAGCATTGCACATTGCTTGATATTAATTCAACAAATTAATTTGATAGCGCTCTTAATTTGCTTG
TCACGTGCCGGTGAACCTGGGTGCTTACTTTACGGGCAAACAATGCATTTGTACCATAGTGTGGTTAGTGGCCAGTAGTG
CTTAGGCCGGCGGCATTTGCCGTGCCTCTGATAGCTAGAACGAACAACTTCTGTGCCTGTTTGTGGGTGTAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis