Browse Element(s) Details


Os.50566.1.S1_at

Description gb:AK064614.1
DB_XREF= gi:32974632
TID=Os.50566.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-C03, full insert sequence.
FL= gb:AK064614.1 gb:AK121861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5336011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53310Os.23163.1.S1_at11/114+31532517..31540357Soluble starch synthase 3, chloroplast precursor, putative, expressed
LOC_Os04g53320OsAffx.26591.1.S1_at11/114+31543868..31544446hypothetical protein
LOC_Os04g53330Os.23474.1.A1_at11/114+31545070..31547791RRM-containing protein, putative, expressed
LOC_Os04g53340NANA4+31547980..31548210hypothetical protein
LOC_Os04g53350OsAffx.4163.1.S1_at11/114+31549966..31554077expressed protein
LOC_Os04g53350Os.57431.1.S1_x_at7/114+31549966..31554077expressed protein
LOC_Os04g53360Os.50566.1.S1_at11/114+31558251..31561915expressed protein
LOC_Os04g53360OsAffx.19501.1.S1_x_at2/114+31558251..31561915expressed protein
LOC_Os04g53370NANA4+31567751..315688681-acyl-sn-glycerol-3-phosphate acyltransferase, putative, expressed
LOC_Os04g53380OsAffx.10806.1.S1_x_at11/114+31569399..31571427expressed protein
LOC_Os04g53380Os.17238.1.S1_at8/114+31569399..31571427expressed protein
LOC_Os04g53390OsAffx.4165.1.S1_at11/114+31582871..31584169BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50566.1.S1_at--542--9211Chr04:31560885..31561012 (25 bp)
TCCAGTACAGGAGTCAGACCGGCCG
LOC_Os04g53360
Os.50566.1.S1_at--368--1391Chr04:31561003..31561027 (25 bp)
AGACCGGCCGGTGTGCTGCTGAAAA
LOC_Os04g53360
Os.50566.1.S1_at--324--6171Chr04:31561052..31561076 (25 bp)
GAGGATGCCTGTTGCAACTCAAGTT
LOC_Os04g53360
Os.50566.1.S1_at--1135--3031Chr04:31561092..31561116 (25 bp)
AATCCTGCTGGAATGTCTGGCTCTG
LOC_Os04g53360
Os.50566.1.S1_at--205--8491Chr04:31561109..31561133 (25 bp)
TGGCTCTGGCCATTGGTTGACTGGA
LOC_Os04g53360
Os.50566.1.S1_at--817--7151Chr04:31561306..31561330 (25 bp)
GTCTATATCTCCAAAGATGGCCAGG
LOC_Os04g53360
Os.50566.1.S1_at--101--5311Chr04:31561340..31561364 (25 bp)
GAAGGGTTGCTTACCGACAATACCA
LOC_Os04g53360
Os.50566.1.S1_at--308--7531Chr04:31561611..31561635 (25 bp)
GTGGCAAGGGATTTCGCCAGTCGAA
LOC_Os04g53360
Os.50566.1.S1_at--646--4751Chr04:31561716..31561740 (25 bp)
GCTGAATTCAAGACGTGCTGGCCTC
LOC_Os04g53360
Os.50566.1.S1_at--272--7311Chr04:31561730..31561754 (25 bp)
GTGCTGGCCTCGTATTCACAGACGA
LOC_Os04g53360
Os.50566.1.S1_at--762--10511Chr04:31561744..31561768 (25 bp)
TTCACAGACGAGGTGGTGCCAATGT
LOC_Os04g53360
Target Sequence 
TCCAGTACAGGAGTCAGACCGGCCGGTGTGCTGCTGAAAATGACCGGTGGGTGACTCCGAACAAGAGGATGCCTGTTGCA
ACTCAAGTTGGCAGAAGAAGAGTAAATCCTGCTGGAATGTCTGGCTCTGGCCATTGGTTGACTGGAGACGATGGGAAGAA
GGTCTATATCTCCAAAGATGGCCAGGAGTTAACTGGAAGGGTTGCTTACCGACAATACCAAAGGGAAAGTGGCAAGGGAT
TTCGCCAGTCGAAGAAGAAAAGTTCGGCTGGAACTAGAGCAAAGAAAGCCACTACTAAGGTGAAACAAGAGAAAACTAGA
GCAAAAAGAAAGCGCTGAATTCAAGACGTGCTGGCCTCGTATTCACAGACGAGGTGGTGCCAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis