Browse Element(s) Details


OsAffx.4165.1.S1_at

Description tigr:9632.m05180
TID=OsAffx.4165.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5339011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53360Os.50566.1.S1_at11/114+31558251..31561915expressed protein
LOC_Os04g53360OsAffx.19501.1.S1_x_at2/114+31558251..31561915expressed protein
LOC_Os04g53370NANA4+31567751..315688681-acyl-sn-glycerol-3-phosphate acyltransferase, putative, expressed
LOC_Os04g53380OsAffx.10806.1.S1_x_at11/114+31569399..31571427expressed protein
LOC_Os04g53380Os.17238.1.S1_at8/114+31569399..31571427expressed protein
LOC_Os04g53390OsAffx.4165.1.S1_at11/114+31582871..31584169BTB/POZ domain containing protein
LOC_Os04g53400OsAffx.4166.1.S1_at11/114+31590645..31591772BTB/POZ domain containing protein
LOC_Os04g53410Os.5294.1.S1_at11/114+31592598..31594336BTB/POZ domain containing protein, expressed
LOC_Os04g53420OsAffx.10931.3.S1_at2/114+31595909..31596364hypothetical protein
LOC_Os04g53430OsAffx.14396.1.S1_at11/114+31598562..31599683BTB/POZ domain containing protein, expressed
LOC_Os04g53440Os.27752.1.S1_at11/114+31600401..31604418RNA Binding Protein 45, putative, expressed
LOC_Os04g53450Os.53152.1.S1_at11/114+31605034..31609789expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4165.1.S1_at--972--6091Chr04:31583573..31583597 (25 bp)
GAGTCTCGCGCTGAAGACGTGAGCA
LOC_Os04g53390
OsAffx.4165.1.S1_at--801--4251Chr04:31583637..31583661 (25 bp)
CCGGCATGTTGCACGGCGTCGAGAT
LOC_Os04g53390
OsAffx.4165.1.S1_at--325--9031Chr04:31583767..31583791 (25 bp)
TGCACGGAGCATCAAGATCGACGAC
LOC_Os04g53390
OsAffx.4165.1.S1_at--1076--831Chr04:31583801..31583825 (25 bp)
ATGGAGCCCGCGACATTCAAGGCGC
LOC_Os04g53390
OsAffx.4165.1.S1_at--676--131Chr04:31583815..31583839 (25 bp)
ATTCAAGGCGCTTCTTCACTTCATC
LOC_Os04g53390
OsAffx.4165.1.S1_at--362--9611Chr04:31583835..31583859 (25 bp)
TCATCTACACGGATCACCTGCCGAA
LOC_Os04g53390
OsAffx.4165.1.S1_at--392--5451Chr04:31583857..31583881 (25 bp)
GAACGACTCCGGATTCGGCAAAGAC
LOC_Os04g53390
OsAffx.4165.1.S1_at--633--5751Chr04:31583983..31584007 (25 bp)
GACGGTCGTGGATTCCCTGGAATTC
LOC_Os04g53390
OsAffx.4165.1.S1_at--63--10851Chr04:31584048..31584072 (25 bp)
TTGGATTCATGGCTTCACCTAACGT
LOC_Os04g53390
OsAffx.4165.1.S1_at--296--3731Chr04:31584066..31584090 (25 bp)
CTAACGTTCTTGGTGTCGTCAGGAA
LOC_Os04g53390
OsAffx.4165.1.S1_at--808--2371Chr04:31584090..31584114 (25 bp)
AAACCGATGGATTCAAGCGTCTCGT
LOC_Os04g53390
Target Sequence 
GAGTCTCGCGCTGAAGACGTGAGCACGATCCCAGTCCCGCCGTCGAACCTGCACCAGCACCTCGCCGGCATGTTGCACGG
CGTCGAGATCGCGGATGTGGAGTTCAGCGTCGGCGGCGAGCCGTTCCGCGCCCACGCGTGCGTGCTGGCGGCGCGGTCGC
CGGTGTTCAGGGCGGAGCTCCTCGGACCAGCTGCTGCACGGAGCATCAAGATCGACGACGACGACGACATGGAGCCCGCG
ACATTCAAGGCGCTTCTTCACTTCATCTACACGGATCACCTGCCGAACGACTCCGGATTCGGCAAAGACGCGGCAATGCA
GCGGCGTCTGCTGGTGGCTGCCGATCGCTACGGGGTGGACAGGCTGAGGGCGATGTGCGGGGTCAAGCTGTACAAGAGCG
TTAGCGTTGGGACGGTCGTGGATTCCCTGGAATTCGCAGAGAAGCACCACTGCGCGCAGCTCAAGGATGCTTGCCTTGGA
TTCATGGCTTCACCTAACGTTCTTGGTGTCGTCAGGAAAACCGATGGATTCAAGCGTCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis