Browse Element(s) Details


Os.27752.1.S1_at

Description gb:AK120834.1
DB_XREF= gi:37990457
TID=Os.27752.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019P13, full insert sequence.
FL= gb:AK120834.1 gb:AK058671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5344011/11RNA Binding Protein 45, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53390OsAffx.4165.1.S1_at11/114+31582871..31584169BTB/POZ domain containing protein
LOC_Os04g53400OsAffx.4166.1.S1_at11/114+31590645..31591772BTB/POZ domain containing protein
LOC_Os04g53410Os.5294.1.S1_at11/114+31592598..31594336BTB/POZ domain containing protein, expressed
LOC_Os04g53420OsAffx.10931.3.S1_at2/114+31595909..31596364hypothetical protein
LOC_Os04g53430OsAffx.14396.1.S1_at11/114+31598562..31599683BTB/POZ domain containing protein, expressed
LOC_Os04g53440Os.27752.1.S1_at11/114+31600401..31604418RNA Binding Protein 45, putative, expressed
LOC_Os04g53450Os.53152.1.S1_at11/114+31605034..31609789expressed protein
LOC_Os04g53460Os.27353.1.S1_at11/114+31612182..31617391AT hook motif family protein, expressed
LOC_Os04g53470Os.10020.1.S1_at10/114+31619083..31622988expressed protein
LOC_Os04g53480Os.35344.18.S1_x_at9/114+31624098..31627850transposon protein, putative, Mutator sub-class
LOC_Os04g53480Os.35344.3.S1_x_at9/114+31624098..31627850transposon protein, putative, Mutator sub-class
LOC_Os04g53480OsAffx.22940.5.S1_x_at3/114+31624098..31627850transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27752.1.S1_at--322--6771Chr04:31603583..31603602 (20 bp)
GTTAACAGGCCTTCTGCTGAGCAAG
LOC_Os04g53440
Os.27752.1.S1_at--750--3331Chr04:31603603..31603627 (25 bp)
CACTGGCAGTGCTACAAGGGACCTT
LOC_Os04g53440
Os.27752.1.S1_at--1148--7651Chr04:31603658..31603682 (25 bp)
GGGTCGAAGCCTTTCAAACAAACAG
LOC_Os04g53440
Os.27752.1.S1_at--569--7491Chr04:31603861..31603885 (25 bp)
GTGGGTATGCACAACCTCAGGATCC
LOC_Os04g53440
Os.27752.1.S1_at--308--7871Chr04:31603914..31603938 (25 bp)
GGTTATCCCAATTACCAACAGCAAC
LOC_Os04g53440
Os.27752.1.S1_at--775--1111Chr04:31604136..31604160 (25 bp)
AGTGAGCCCTGTTTGATCGATCGCG
LOC_Os04g53440
Os.27752.1.S1_at--322--4651Chr04:31604158..31604182 (25 bp)
GCGTCTTTGGGCTGTGAGGCACACA
LOC_Os04g53440
Os.27752.1.S1_at--490--2211Chr04:31604180..31604204 (25 bp)
ACAACCCATTTCAAGCTACAGCTTT
LOC_Os04g53440
Os.27752.1.S1_at--745--5752Chr04:31604234..31604258 (25 bp)
GACGGTTTCTGAAGACTCCAGATTT
LOC_Os04g53440
Os.27752.1.S1_at--1039--2571Chr04:31604301..31604325 (25 bp)
AACGGATGCTGCCATATCGTGGTTC
LOC_Os04g53440
Os.27752.1.S1_at--13--511Chr04:31604316..31604340 (25 bp)
ATCGTGGTTCCTATATTGAGTCATG
LOC_Os04g53440
Target Sequence 
GTTAACAGGCCTTCTGCTGAGCAAGCACTGGCAGTGCTACAAGGGACCTTGATTGGTGGGCAGAATGTTAGACTTTCNTG
GGGTCGAAGCCTTTCAAACAAACAGCCTCAGCANGACTCGAATCAGTGGGGTGCTGGTGCTGGTGCTGGTGNNNNNNGTT
ACTATGGTGGCTATGGACAAGGTTATGAGGCTTATGGTGGGTATGCACAACCTCAGGATCCTAACATGTATGGTTATGGA
GCCTATGCTGGTTATCCCAATTACCAACAGCAACAAGTAGCACAGCAGCAGCCGCCGCAGCAGTGAGCCCTGTTTGATCG
ATCGCGTCTTTGGGCTGTGAGGCACACAACCCATTTCAAGCTACAGCTTTAGCTATGTTATTGCTATTCTCAATAGAGAG
ACGGTTTCTGAAGACTCCAGATTTCGATTGAGGTTTTAATGTATGAACTGTATTATGATTATGAACAACGGATGCTGCCA
TATCGTGGTTCCTATATTGAGTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis