Browse Element(s) Details


Os.5061.1.S1_s_at

Description gb:AU173270
DB_XREF= gi:12623057
DB_XREF=AU173270
CLONE=R1968
TID=Os.5061.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.5061 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187828.1 (A.thaliana) serine carboxypeptidase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0972010/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09654Os.10277.1.S1_at9/114+5158495..5166516O-methyltransferase family protein, expressed
LOC_Os04g09654Os.19369.1.S1_at1/114+5158495..5166516O-methyltransferase family protein, expressed
LOC_Os04g09670NANA4+5169870..5171591Caffeic acid 3-O-methyltransferase, putative, expressed
LOC_Os04g09680NANA4+5174012..5174764O-methyltransferase family protein
LOC_Os04g09690OsAffx.22368.1.S1_x_at1/114+5176458..5179414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09700NANA4+5180295..5182271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09710OsAffx.20565.1.S1_at1/114+5182907..5185834retrotransposon protein, putative, unclassified
LOC_Os04g09720OsAffx.13735.1.S1_at11/114+5187951..5196589Serine carboxypeptidase family protein, expressed
LOC_Os04g09720Os.5061.1.S1_s_at10/114+5187951..5196589Serine carboxypeptidase family protein, expressed
LOC_Os04g09730OsAffx.13736.1.S1_at11/114+5202262..5202486hypothetical protein
LOC_Os04g09740NANA4+5204532..5205224transposon protein, putative, Pong sub-class, expressed
LOC_Os04g09750NANA4+5207079..5208881hypothetical protein
LOC_Os04g09760Os.46012.2.S1_x_at10/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.46012.3.S1_x_at6/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.27088.1.A1_x_at5/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.54691.1.S1_x_at1/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09770OsAffx.3756.1.S1_at11/114+5221481..5223329Ser/Thr protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5061.1.S1_s_at--924--8471Chr04:5191385..5191409 (25 bp)
TGGCACCCAAGGATGGCTTAGATCT
LOC_Os04g09720
Os.5061.1.S1_s_at--799--9691Chr04:5191347..5191371 (25 bp)
TCACACATGGTTGGCGACCATGGTA
LOC_Os04g09720
Os.5061.1.S1_s_at--514--4611Chr04:5191334..5191358 (25 bp)
GCGACCATGGTACGTCAACAGCCAA
LOC_Os04g09720
Os.5061.1.S1_s_at--126--831Chr04:5191328..5191352 (25 bp)
ATGGTACGTCAACAGCCAAGTGGTA
LOC_Os04g09720
Os.5061.1.S1_s_at--673--2151NONE
ACAGCCAAGTGGTAGGGTTCACAAG
NONE
Os.5061.1.S1_s_at--441--9211Chr04:5190345..5190369 (25 bp)
TCCAATAACTTGACATACGCAACTG
LOC_Os04g09720
Os.5061.1.S1_s_at--646--7611Chr04:5190133..5190157 (25 bp)
GGGAACCTCTTTGATCAATCCAGTA
LOC_Os04g09720
Os.5061.1.S1_s_at--305--6451Chr04:5190121..5190145 (25 bp)
GATCAATCCAGTAATTAGGAGTCTG
LOC_Os04g09720
Os.5061.1.S1_s_at--999--10431Chr04:5190107..5190131 (25 bp)
TTAGGAGTCTGTTCTCTTAACTAAG
LOC_Os04g09720
Os.5061.1.S1_s_at--422--10371Chr04:5190051..5190075 (25 bp)
TTTTTTCTATTCTGACTCGCTTATT
LOC_Os04g09720
Os.5061.1.S1_s_at--510--10211Chr04:5190044..5190068 (25 bp)
TATTCTGACTCGCTTATTCTATCTA
LOC_Os04g09720
Target Sequence 
TGGCACCCAAGGATGGCTTAGATCTNTTAACCTGTCCNTCACACATGGTTGGCGACCATGGTACGTCAACAGCCAAGTGG
TAGGGTTCACAAGANCTTACTCCAATAACTTGACATACGCAACTGTGAAGGGTGCTGGGCNCACAGCCCCGGAGTNCANG
CCAAAGGAGNGTCNTNCTATGGTTGATAGATGGCTTTNTGGGGAACCTCTTTGATCAATCCAGTAATTAGGAGTCTGTTC
TCTTAACTAAGATTCTNTTATTTATATGTGTTCTACTATTTTTTTTTTCTATTCTGACTCGCTTATTCTATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5061.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis