Browse Element(s) Details


Os.50613.1.S1_at

Description gb:AK122096.1
DB_XREF= gi:37991742
TID=Os.50613.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125D04, full insert sequence.
FL= gb:AK106956.1 gb:AK122096.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2523011/11calcium channel isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25190OsAffx.2741.1.S1_at11/112+14650212..14651359hypothetical protein
LOC_Os02g25200OsAffx.24416.1.S1_x_at11/112+14652906..14653725expressed protein
LOC_Os02g25200OsAffx.24416.1.S1_at11/112+14652906..14653725expressed protein
LOC_Os02g25210OsAffx.19946.1.S1_at11/112+14655721..14656800hypothetical protein
LOC_Os02g25220OsAffx.12186.1.S1_at11/112+14659161..14662082hypothetical protein
LOC_Os02g25230Os.50613.1.S1_at11/112+14675186..14678936calcium channel isoform, putative, expressed
LOC_Os02g25240OsAffx.12187.1.S1_at11/112+14679575..14679787hypothetical protein
LOC_Os02g25250OsAffx.31827.2.S1_at11/112+14695953..14698849hypothetical protein
LOC_Os02g25260OsAffx.20615.1.S1_at1/112+14699676..14706157retrotransposon protein, putative, unclassified
LOC_Os02g25260OsAffx.29160.1.S1_at1/112+14699676..14706157retrotransposon protein, putative, unclassified
LOC_Os02g25260OsAffx.22699.1.S1_x_at1/112+14699676..14706157retrotransposon protein, putative, unclassified
LOC_Os02g25260OsAffx.16111.1.S1_at1/112+14699676..14706157retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50613.1.S1_at--815--9991Chr02:14678377..14678401 (25 bp)
TAGCCGGTGGCATTGATCGTGCGCA
LOC_Os02g25230
Os.50613.1.S1_at--847--1771Chr02:14678401..14678425 (25 bp)
ACCGGCTAGTGTTCGTTGCTGCAAA
LOC_Os02g25230
Os.50613.1.S1_at--593--1411Chr02:14678462..14678486 (25 bp)
AGACAAGGATGCTGAGTTACTCACT
LOC_Os02g25230
Os.50613.1.S1_at--878--2591Chr02:14678508..14678532 (25 bp)
AACGAGCCTGGCAGTTTGGAGCGCT
LOC_Os02g25230
Os.50613.1.S1_at--105--4791Chr02:14678530..14678554 (25 bp)
GCTCCTCAGTGTAACACCCTTATTT
LOC_Os02g25230
Os.50613.1.S1_at--388--4331Chr02:14678669..14678693 (25 bp)
CCATGCTGTTAATTCTTACTTCCTC
LOC_Os02g25230
Os.50613.1.S1_at--971--10471Chr02:14678684..14678708 (25 bp)
TTACTTCCTCACTCTAGATTTTGGT
LOC_Os02g25230
Os.50613.1.S1_at--429--8051Chr02:14678733..14678757 (25 bp)
GGAGATATGCATCCTTTGTTCATCA
LOC_Os02g25230
Os.50613.1.S1_at--104--5271Chr02:14678769..14678793 (25 bp)
GAATGACTGTCTCTTGCCATATATG
LOC_Os02g25230
Os.50613.1.S1_at--821--7551Chr02:14678802..14678826 (25 bp)
GGGCCATTGAACTTGCAGAGATTAA
LOC_Os02g25230
Os.50613.1.S1_at--416--271Chr02:14678844..14678868 (25 bp)
ATATGTTCATAGTCGGTGGTACACC
LOC_Os02g25230
Target Sequence 
TAGCCGGTGGCATTGATCGTGCGCACCGGCTAGTGTTCGTTGCTGCAAATTCCAAGCTAGAGAGGAGGGATTTCTCAAGT
GATGAAGACAAGGATGCTGAGTTACTCACTGAAGGGGACGATGATGTGCTAAACGAGCCTGGCAGTTTGGAGCGCTCCTC
AGTGTAACACCCTTATTTAATTGTTCGTTTCTTTTTCTCTATTAGCCTTTTTTAGAAGTTAATCCCTAGGAATTTGCTAG
AATTTCCACCCCCTACCTATTTTTTTGCCTCCTAGAAATTTCTTCCTCGTGCCCATGCTGTTAATTCTTACTTCCTCACT
CTAGATTTTGGTGGGGTGGGGAGTGGGGCATGAGATGGAGATATGCATCCTTTGTTCATCAAGTTTGGTTAAGAATGACT
GTCTCTTGCCATATATGATTCCATGGGGCCATTGAACTTGCAGAGATTAATGGAAGTCTTTCTGTCAATATGTTCATAGT
CGGTGGTACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis