Browse Element(s) Details


Os.50614.2.S1_x_at

Description gb:AK122116.1
DB_XREF= gi:37991762
TID=Os.50614.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128A21, full insert sequence.
FL= gb:AK122116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2758011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27520NANA8+16658309..16659979retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27530OsAffx.17191.1.S1_at11/118+16660405..16663927hypothetical protein
LOC_Os08g27540Os.54366.1.S1_at11/118+16664745..16668048expressed protein
LOC_Os08g27550NANA8+16668802..16669157hypothetical protein
LOC_Os08g27560OsAffx.5952.1.S1_at2/118+16670594..16671058hypothetical protein
LOC_Os08g27570OsAffx.278.1.S1_at1/118+16672003..16676015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27580Os.50614.1.S1_at11/118+16678856..16682068expressed protein
LOC_Os08g27580Os.50614.2.S1_x_at11/118+16678856..16682068expressed protein
LOC_Os08g27590OsAffx.23483.1.S1_x_at1/118+16687498..16690773retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27590OsAffx.25361.1.S1_at1/118+16687498..16690773retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27600NANA8+16693020..16693802hypothetical protein
LOC_Os08g27610OsAffx.5954.5.S1_x_at5/118+16695379..16697978retrotransposon protein, putative, unclassified
LOC_Os08g27620NANA8+16700341..16700850retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27630OsAffx.5963.1.S1_at3/118+16701335..16706445retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50614.2.S1_x_at--591--10211Chr08:16679614..16679638 (25 bp)
TTTAGGTAACCTGCCCAAGTGAATT
LOC_Os08g27580
Os.50614.2.S1_x_at--1066--10711Chr08:16679675..16679699 (25 bp)
TTGCTGTTCCTGGATGATTCTCTTC
LOC_Os08g27580
Os.50614.2.S1_x_at--831--112Chr10:4310544..4310570 (25 bp)
ATTCTCTTCTGTTTCATGGTCTGCA
NONE
Os.50614.2.S1_x_at--407--2132Chr10:4310579..4310765 (25 bp)
ACAGTGTTTACAAGCGTGACTCCGC
NONE
Os.50614.2.S1_x_at--1035--7192Chr10:4310946..4310966 (21 bp)
GTCGATCCTGCCTGCGAACAAGTAT
NONE
Os.50614.2.S1_x_at--1134--6431Chr08:16680905..16680929 (25 bp)
GATCAGTTGCTCATGGCCGGTAGGA
LOC_Os08g27580
Os.50614.2.S1_x_at--306--912Chr10:4311757..4311777 (21 bp)
AGGCTTCCACACTACGAGGTACCAT
NONE
Os.50614.2.S1_x_at--366--6152Chr09:9115354..9115377 (24 bp)
GAGGTACCATCTCATGAGGTTCGTG
NONE
Os.50614.2.S1_x_at--194--7892Chr10:4312792..4312816 (25 bp)
GGTTCGTGGTGGTTTTCGATTCTAT
NONE
Os.50614.2.S1_x_at--220--6552Chr10:4312856..4312880 (25 bp)
GATTTTCCTCCATCAATGTTCATGT
NONE
Os.50614.2.S1_x_at--847--2992Chr09:9115448..9115472 (25 bp)
AATGTTCATGTTACTTGCTGTTGGT
NONE
Target Sequence 
TTTAGGTAACCTGCCCAAGTGAATTGTATTAACTAATTGATGTTTTTTTGGGGGGTCTCTGTTGCTGTTCCTGGATGATT
CTCTTCTGTTTCATGGTCTGCAGTGCATGGACAGTGTTTACAAGCGTGACTCCGCGCGACGGCTGGAGGAGGCGAGGTCG
GGCCTGCCCTCCATAGACGGCAGACTCCGCGTGACGGCTGGAGGAGGCGAGGTCGGGCCTGCCCTCCATCGACACTCCAC
GCCGCCGCAGCCCGCAGCCCCATCAGCGCCGTCGCTCCATCGCCGTCCCGACCTCGAAGGCGAACCGGTTTCGAGTCCCT
CGCGCTGCCACTGATCCCAGGGCTCCTCAACCCTGCAAGCCGTCGATCCTGCCTGCGAACAAGTATCGAGGGGGGTCTTG
GCCGGATCAGTTGCTCATGGCCGGTAGGAGTGAGGAGTACACAGGCTTCCACACTACGAGGTACCATCTCATGAGGTTCG
TGGTGGTTTTCGATTCTATTTATGTACAGGTGATCACTTTATGAACAATAATCATCTTGATTTTCCTCCATCAATGTTCA
TGTTACTTGCTGTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50614.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis