Browse Element(s) Details


OsAffx.25361.1.S1_at

Description tigr:9631.m03354
TID=OsAffx.25361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3415011/11hypothetical protein
LOC_Os08g275901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g34096NANA3+19384837..19386144hypothetical protein
LOC_Os03g34102OsAffx.16354.1.S1_x_at1/113+19386887..19388800hypothetical protein
LOC_Os03g34110Os.10731.1.A1_a_at7/113+19391971..19392798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g34110Os.38764.1.S1_x_at1/113+19391971..19392798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g34120NANA3+19395096..19395724hypothetical protein
LOC_Os03g34129NANA3+19396168..19398189retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g34140NANA3+19400701..19402966retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g34150OsAffx.25361.1.S1_at11/113+19407037..19408021hypothetical protein
LOC_Os03g34160OsAffx.8338.1.S1_x_at2/113+19409167..19410158hypothetical protein
LOC_Os03g34160OsAffx.10020.1.S1_x_at1/113+19409167..19410158hypothetical protein
LOC_Os03g34160OsAffx.22240.1.S1_x_at1/113+19409167..19410158hypothetical protein
LOC_Os03g34170NANA3+19412686..19414500retrotransposon protein, putative, unclassified
LOC_Os03g34180NANA3+19415994..19417782retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34190Os.45173.1.S1_x_at3/113+19419912..19426712retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34200Os.45173.1.S1_x_at4/113+19428882..19431728retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25361.1.S1_at--959--2311Chr03:19407464..19407488 (25 bp)
AAAGTCAAGTCTCTTGAGGCCCGGC
LOC_Os03g34150
OsAffx.25361.1.S1_at--344--1551Chr03:19407514..19407538 (25 bp)
AGCTTTGGCGCCGACGACAGAGTCT
LOC_Os03g34150
OsAffx.25361.1.S1_at--247--2411Chr03:19407542..19407566 (25 bp)
AAACAGGCTTGCTATACTCTTCGGC
LOC_Os03g34150
OsAffx.25361.1.S1_at--459--8571Chr03:19407616..19407640 (25 bp)
TGGATCAGCGTTCGACTTCTCTGAG
LOC_Os03g34150
OsAffx.25361.1.S1_at--261--9651Chr03:19407662..19407686 (25 bp)
TCAGTTGTCGAAGCGGCTGGCGCAT
LOC_Os03g34150
OsAffx.25361.1.S1_at--1040--311Chr03:19407685..19407709 (25 bp)
ATACGGCGACTGCTGCGCACGAGTT
LOC_Os03g34150
OsAffx.25361.1.S1_at--358--6691Chr03:19407707..19407731 (25 bp)
GTTGCCGTGGGCTTCATGCTCAGCA
LOC_Os03g34150
OsAffx.25361.1.S1_at--562--631Chr03:19407722..19407746 (25 bp)
ATGCTCAGCATTCTTCACGAACATG
LOC_Os03g34150
OsAffx.25361.1.S1_at--998--8771Chr03:19407749..19407773 (25 bp)
TGTTACCATGTTGAGGACTTTCCCC
LOC_Os03g34150
OsAffx.25361.1.S1_at--379--3032Chr03:19407807..19407831 (25 bp)
AATCCGTCACGTTTGCTTTGAAGGC
LOC_Os03g34150
OsAffx.25361.1.S1_at--260--4272Chr08:16690632..16690654 (23 bp)
CCGGCTTCGCGAGCAGCTGGAGAAA
LOC_Os08g27590
Target Sequence 
AAAGTCAAGTCTCTTGAGGCCCGGCTTGGCCCAGCCGAAGCTGCTGCTGAAGCTTTGGCGCCGACGACAGAGTCTGCCAA
ACAGGCTTGCTATACTCTTCGGCTGGCTCTCAACTACCTTGGGGCGCATGTAGAAGGCGCTCTGGGTGAAGATGGATCAG
CGTTCGACTTCTCTGAGTGGACGCAGGATGCGGCCGGCTCAGTTGTCGAAGCGGCTGGCGCATACGGCGACTGCTGCGCA
CGAGTTGCCGTGGGCTTCATGCTCAGCATTCTTCACGAACATGGTTGTTACCATGTTGAGGACTTTCCCCAAACCGTGAA
GAAGGATTGGCCCGAAAGTTCCCAATCCGTCACGTTTGCTTTGAAGGCCTTTCGGAAGAACTTCTGGGAAAGCGGCGGTA
AGGATGGGGCGAAGACCCGGCTTCGCGAGCAGCTGGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis