CREP Browser

Os.50730.1.S1_x_at

Description

gb:D47327
DB_XREF= gi:701036
DB_XREF=RICS12632A
TID=Os.50730.1
CNT=5
FEA=RNA
TIER=ConsEnd
STK=0
UG=Os.50730 (NCBI UniGene Cluster)
UG_TITLE=Box CD snoRNA J24.2, complete sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g18670	9/11	Flavonol 3-O-glucosyltransferase 5, putative, expressed
LOC_Os06g18780	1/11	transposon protein, putative, CACTA, En/Spm sub-class, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g18150	Os.54124.1.S1_at	3/11	6	+	10560048..10562820	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18150	Os.51348.1.S1_x_at	2/11	6	+	10560048..10562820	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18160	NA	NA	6	+	10564255..10565182	hypothetical protein
LOC_Os06g18164	Os.46986.1.S1_at	1/11	6	+	10574292..10580520	hypothetical protein
LOC_Os06g18164	Os.2741.4.S1_x_at	1/11	6	+	10574292..10580520	hypothetical protein
LOC_Os06g18670	Os.50730.1.S1_x_at	9/11	6	+	10587160..10588925	Flavonol 3-O-glucosyltransferase 5, putative, expressed
LOC_Os06g18670	Os.48061.1.A1_x_at	4/11	6	+	10587160..10588925	Flavonol 3-O-glucosyltransferase 5, putative, expressed
LOC_Os06g18680	NA	NA	6	+	10594342..10594830	hypothetical protein
LOC_Os06g18690	NA	NA	6	+	10598205..10598619	hypothetical protein
LOC_Os06g18700	NA	NA	6	+	10603308..10603548	hypothetical protein
LOC_Os06g18710	NA	NA	6	+	10608213..10609410	retrotransposon protein, putative, unclassified
LOC_Os06g18720	NA	NA	6	+	10612440..10613989	retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0008194	molecular_function	UDP-glycosyltransferase activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50730.1.S1_x_at--309--417	1	Chr06:10588844..10588868 (25 bp)	CGCCTGCGGTGCTCAGCTCCGGTGA	LOC_Os06g18670
Os.50730.1.S1_x_at--730--383	1	Chr06:10588841..10588865 (25 bp)	CTGCGGTGCTCAGCTCCGGTGAGCT	LOC_Os06g18670
Os.50730.1.S1_x_at--876--159	1	Chr06:10588830..10588854 (25 bp)	AGCTCCGGTGAGCTCGGCGCGCGAG	LOC_Os06g18670
Os.50730.1.S1_x_at--1046--479	1	Chr06:10588819..10588843 (25 bp)	GCTCGGCGCGCGAGGGCACACACGG	LOC_Os06g18670
Os.50730.1.S1_x_at--994--217	1	Chr06:10588802..10588826 (25 bp)	ACACACGGCCGCACGTCGTGTTCGT	LOC_Os06g18670
Os.50730.1.S1_x_at--96--191	1	Chr06:10588790..10588814 (25 bp)	ACGTCGTGTTCGTCCCGAGCGCCGG	LOC_Os06g18670
Os.50730.1.S1_x_at--885--121	2	Chr06:10648645..10648668 (24 bp)	AGTTCTTCCGCTTCATCGGCGCGCT	LOC_Os06g18780
Os.50730.1.S1_x_at--359--935	1	Chr06:10588613..10588637 (25 bp)	TCGACTTCGACCTGCTGCCGTTCGA	LOC_Os06g18670
Os.50730.1.S1_x_at--1024--909	1	Chr06:10588601..10588625 (25 bp)	TGCTGCCGTTCGACGCGTCCGAGTT	LOC_Os06g18670
Os.50730.1.S1_x_at--705--411	1	NONE	GCGACCCGTTCCTGCTTCGGTGGGA	NONE
Os.50730.1.S1_x_at--39--1067	1	NONE	TTCCTGCTTCGGTGGGAGGCCCTGC	NONE

Target Sequence

CGCCTGCGGTGCTCAGCTCCGGTGAGCTCGGCGCGCGAGGGCACACACGGCCGCACGTCGTGTTCGTCCCGAGCGCCGGC
ATGGGCCACCTCCTCCAGTTCTTCCGCTTCATCGGCGCGCTGTCCGCCCACGACGTCGACATCTCCGTNGTCACCGTNTT
CCCGACCGTNTCCGCCGCCGAGGCCGACCACTTCGCCGCCCTCTTNAGGGACTATCCCAGCGTCCGCCGCCTCGACTTCG
ACCTGCTGCCGTTCGACGCGTCCGAGTTNCCCGGCGGCGACCCGTTCCTGCTTCGGTGGGAGGCCCTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

Browse Element(s) Details