Browse Element(s) Details


Os.50756.1.S1_at

Description gb:AK058363.1
DB_XREF= gi:32968381
TID=Os.50756.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-F08, full insert sequence.
FL= gb:AK058363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2125010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21210Os.6405.1.S1_at11/119+12801545..12804260beta-glucan binding protein, putative, expressed
LOC_Os09g21210Os.6405.1.S2_at11/119+12801545..12804260beta-glucan binding protein, putative, expressed
LOC_Os09g21220OsAffx.4929.1.S1_at1/119+12808266..12809010hypothetical protein
LOC_Os09g21230Os.52593.1.S1_s_at11/119+12816241..12820673acyl-activating enzyme 17, putative, expressed
LOC_Os09g21230Os.38408.1.S1_a_at11/119+12816241..12820673acyl-activating enzyme 17, putative, expressed
LOC_Os09g21240NANA9+12822760..12823020hypothetical protein
LOC_Os09g21250Os.50756.1.S1_at10/119+12824718..12827073expressed protein
LOC_Os09g21260OsAffx.29959.1.S1_at11/119+12830414..12831877Cytochrome P450 family protein, expressed
LOC_Os09g21270OsAffx.17822.1.S1_at11/119+12832198..12833402hypothetical protein
LOC_Os09g21280NANA9+12834965..12837614hypothetical protein
LOC_Os09g21290Os.51764.1.S1_at11/119+12846731..12847958expressed protein
LOC_Os09g21300OsAffx.29960.1.S1_at11/119+12850202..12851458hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0005739cellular_componentmitochondrion
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50756.1.S1_at--987--2671Chr09:12826194..12826218 (25 bp)
AAGCGAGTTGAGGAATCCCCGTCAT
LOC_Os09g21250
Os.50756.1.S1_at--645--4191Chr09:12826211..12826235 (25 bp)
CCCGTCATGGGTAAAGGCACTGCTT
LOC_Os09g21250
Os.50756.1.S1_at--731--9551Chr09:12826282..12826306 (25 bp)
TCTTTTTCGCTTTCATTGCTGGTTG
LOC_Os09g21250
Os.50756.1.S1_at--801--5951Chr09:12826326..12826346 (21 bp)
GAGAATGGACCTGCATTCCAGCTTG
LOC_Os09g21250
Os.50756.1.S1_at--205--91Chr09:12826642..12826662 (21 bp)
ATTCCAGCTTGCAATATCTCTCTTC
LOC_Os09g21250
Os.50756.1.S1_at--38--471Chr09:12826653..12826677 (25 bp)
ATCTCTCTTCTCGTGCATATATTTC
LOC_Os09g21250
Os.50756.1.S1_at--170--7951Chr09:12826834..12826858 (25 bp)
GGATAATTGGCTCTCTATTGGTCCC
LOC_Os09g21250
Os.50756.1.S1_at--631--8591Chr09:12826890..12826914 (25 bp)
TGGTCCCTTGAGCTACTTACATCAT
LOC_Os09g21250
Os.50756.1.S1_at--617--10451Chr09:12826914..12826938 (25 bp)
TTAGTTGCATATGTCTTCCTGTTCC
LOC_Os09g21250
Os.50756.1.S1_at--920--8631NONE
TGGGTTGCACTCTCCTCAAATGAAA
NONE
Os.50756.1.S1_at--562--2091Chr09:12827024..12827048 (25 bp)
ACATCTCCACTATGGGTCTCGGAAA
LOC_Os09g21250
Target Sequence 
AAGCGAGTTGAGGAATCCCCGTCATGGGTAAAGGCACTGCTTGGATATTTTGAGGTGCCACAAATGGATATCATTTCAAG
AAGATTGTTCTTTTTCGCTTTCATTGCTGGTTGGAGCATAGCGACTTCTGCTGAGAATGGACCTGCATTCCAGCTTGCAA
TATCTCTCTTCTCGTGCATATATTTCCTTAATGATAAGATGAAGAACCTCATGAGGGCATCAACAACTGGGTTTGGAGTG
CTTGTTGGTGGCTGGATAATTGGCTCTCTATTGGTCCCACTTATCCCAACATTCATCATCCCACCCTCTTGGTCCCTTGA
GCTACTTACATCATTAGTTGCATATGTCTTCCTGTTCCTGGGTTGCACTCTCCTCAAATGAAAACCTTGTAAATCTTGTA
ACCGTAAATTGTAGAATTGCTTGCAGAAATTTTGCAACTACTGACATCTCCACTATGGGTCTCGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis