Browse Element(s) Details


Os.50784.1.S1_at

Description gb:AK058553.1
DB_XREF= gi:32968571
TID=Os.50784.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C11, full insert sequence.
FL= gb:AK058553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5157011/11Vacuolar processing enzyme precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51550OsAffx.15198.1.S1_x_at11/115+29471513..29476608expressed protein
LOC_Os05g51550Os.54721.1.A1_at10/115+29471513..29476608expressed protein
LOC_Os05g51560Os.21837.1.S1_at11/115+29487871..29492718Casein kinase I, delta isoform, putative, expressed
LOC_Os05g51570Os.50784.1.S1_at11/115+29495779..29497300Vacuolar processing enzyme precursor, putative, expressed
LOC_Os05g51580OsAffx.27406.1.S1_at11/115+29500557..29501019hypothetical protein
LOC_Os05g51590Os.10294.1.S1_at11/115+29501485..29502876B2 protein, putative, expressed
LOC_Os05g51610Os.27828.1.S1_a_at11/115+29505383..29510567Vacuolar cation/proton exchanger 1b, putative, expressed
LOC_Os05g51620Os.19034.1.S1_at11/115+29512303..29518084expressed protein
LOC_Os05g51620Os.50278.2.S1_at1/115+29512303..29518084expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006624biological_processvacuolar protein processing or maturation
GO:0010214biological_processseed coat development
GO:0012501biological_processprogrammed cell death
GO:0000323cellular_componentlytic vacuole
GO:0005615cellular_componentextracellular space
GO:0003923molecular_functionGPI-anchor transamidase activity
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50784.1.S1_at--293--1671Chr05:29496346..29496370 (25 bp)
AGCCTGGACCTCTACTACATGGATA
LOC_Os05g51570
Os.50784.1.S1_at--170--9871Chr05:29496331..29496355 (25 bp)
TACATGGATACATCACCTGCGACGG
LOC_Os05g51570
Os.50784.1.S1_at--637--5731Chr05:29496311..29496335 (25 bp)
GACGGCGAACGACCACAAATTAGCT
LOC_Os05g51570
Os.50784.1.S1_at--225--1711Chr05:29496300..29496324 (25 bp)
ACCACAAATTAGCTGCTGCTGGCGC
LOC_Os05g51570
Os.50784.1.S1_at--803--1691Chr05:29496268..29496292 (25 bp)
AGCCACTCCTACACTGTGTCTGTGA
LOC_Os05g51570
Os.50784.1.S1_at--603--8711Chr05:29496252..29496276 (25 bp)
TGTCTGTGAATCAGCGCGACGCCGA
LOC_Os05g51570
Os.50784.1.S1_at--577--4051Chr05:29496230..29496254 (25 bp)
CGATCTGCTCTACTTGTGGCGCAAG
LOC_Os05g51570
Os.50784.1.S1_at--92--1911Chr05:29495967..29495991 (25 bp)
ACGGGATAAAGCACATGCGCTCCTT
LOC_Os05g51570
Os.50784.1.S1_at--387--4291Chr05:29495869..29495893 (25 bp)
CCTCCGTTACACTTATGATCTCTAA
LOC_Os05g51570
Os.50784.1.S1_at--572--9531Chr05:29495849..29495873 (25 bp)
TCTAATTGATCTCCATCACTAGCTG
LOC_Os05g51570
Os.50784.1.S1_at--729--5071Chr05:29495825..29495849 (25 bp)
GCAGCCTGCAATAACAATGATCGAT
LOC_Os05g51570
Target Sequence 
AGCCTGGACCTCTACTACATGGATACATCACCTGCGACGGCGAACGACCACAAATTAGCTGCTGCTGGCGCCAAAGGCAG
CCACTCCTACACTGTGTCTGTGAATCAGCGCGACGCCGATCTGCTCTACTTGTGGCGCAAGTACCGGAGAGCCGGCGAGG
GGACGGCAGAGAAGGTGGAGGCTCGGGAGCGGCTTGTGCAGGAGATGGGACGGCGATCGCGCGTGGACAGAAGCGTGGAG
ATGATCGGGGGCCTCCTCTTGGGCGGCGCCAAGCACAAGCAGCAGGTTGTGCGGGAGCGGGCTGCGCTGGTTGAGGACTG
GGAGTGCCTCAGGTCGATGGTGCGGACGTTCGAGGATCAGTGTGGGTCGCTGGGACAGTACGGGATAAAGCACATGCGCT
CCTTCGCCAACATCTGCAACGCCGGCGTCCCCCACCACGCCATGGCCAAGGCCGCCTCCCTGGCCTGTCCATCCCCCCCT
CCGTTACACTTATGATCTCTAATTGATCTCCATCACTAGCTGCAGCCTGCAATAACAATGATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis