Browse Element(s) Details


Os.50791.1.S1_at

Description gb:AK068762.1
DB_XREF= gi:32978787
TID=Os.50791.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013165P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013165P15, full insert sequence.
FL= gb:AK068762.1 gb:AK058592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5353011/11zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53500Os.2212.1.S1_at11/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500Os.51090.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500OsAffx.30917.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53510Os.57181.1.S1_at11/112+32722558..32723477expressed protein
LOC_Os02g53520Os.26359.1.S1_a_at6/112+32725320..32734354kinesin motor protein, putative, expressed
LOC_Os02g53530Os.50791.1.S1_at11/112+32744254..32745505zinc finger protein, putative, expressed
LOC_Os02g53540NANA2+32751206..32754497retrotransposon protein, putative, unclassified
LOC_Os02g53550NANA2+32755126..32761261retrotransposon protein, putative, unclassified
LOC_Os02g53559NANA2+32764474..32764597NA

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50791.1.S1_at--107--8391Chr02:32744774..32744798 (25 bp)
GGCGCACTACCCGATGTGGACGAGC
LOC_Os02g53530
Os.50791.1.S1_at--583--871Chr02:32744716..32744740 (25 bp)
ATGGCGCAGCCCATCAACGGTAGCC
LOC_Os02g53530
Os.50791.1.S1_at--233--6131Chr02:32744458..32744482 (25 bp)
GAGGGTGTCAGCTTGGACCTCCATT
LOC_Os02g53530
Os.50791.1.S1_at--792--5831Chr02:32744443..32744467 (25 bp)
GACCTCCATTTGTAATCCATGTCTA
LOC_Os02g53530
Os.50791.1.S1_at--1008--7131Chr02:32744423..32744447 (25 bp)
GTCTAATTAGGTTTTCTTCTTGTGG
LOC_Os02g53530
Os.50791.1.S1_at--886--10551Chr02:32744410..32744434 (25 bp)
TTCTTCTTGTGGATTAGCAGTCGCA
LOC_Os02g53530
Os.50791.1.S1_at--364--7691Chr02:32744380..32744404 (25 bp)
GGGTATGTTAATTCTCATAGCTTAA
LOC_Os02g53530
Os.50791.1.S1_at--952--351Chr02:32744355..32744379 (25 bp)
ATAATCTACTCTTTTTGCCTTGTCC
LOC_Os02g53530
Os.50791.1.S1_at--821--7251Chr02:32744334..32744358 (25 bp)
GTCCGGATCCAAGTTTAGCTAGCTA
LOC_Os02g53530
Os.50791.1.S1_at--412--10011Chr02:32744315..32744339 (25 bp)
TAGCTACCTAGCTTGTGTTGCCACT
LOC_Os02g53530
Os.50791.1.S1_at--1061--7391Chr02:32744301..32744325 (25 bp)
GTGTTGCCACTTTATTTTTACCAGG
LOC_Os02g53530
Target Sequence 
GGCGCACTACCCGATGTGGACGAGCGCCGCCCCGGGCGCCTTCGCCGGGCCNGGNTCCATGGCGCAGCCCATCAACGGTA
GCCCCGTGCAGGCCGGGCTGTGGAGCGTGCCGCCGCCGACGGAGAATTTCGGCAGCACGGCCGGCAGGCAGGGCGCTGAC
AANCTGGCTACTACGGTGGCGGGCACGCCGGCGGCGGGGGAGGTGGCATGCAAGGACGAGATGGTGCCGATGAGCTTGCT
GTCCTCGTCGCCTTCGTTGTCGTCGTGCTCGTCGACGTCGCCGGAGATGCTAGGTAGGTGTGAATTGGGGCAGAAGGAGG
GTGTCAGCTTGGACCTCCATTTGTAATCCATGTCTAATTAGGTTTTCTTCTTGTGGATTAGCAGTCGCAAGAAAGGGTAT
GTTAATTCTCATAGCTTAAATAATCTACTCTTTTTGCCTTGTCCGGATCCAAGTTTAGCTAGCTACCTAGCTTGTGTTGC
CACTTTATTTTTACCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis