Browse Element(s) Details


Os.57181.1.S1_at

Description gb:AK111093.1
DB_XREF= gi:32996302
TID=Os.57181.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G05, full insert sequence.
FL= gb:AK111093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5351011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53450Os.19414.1.S1_a_at11/112+32694564..32698762expressed protein
LOC_Os02g53450Os.20829.1.S1_at1/112+32694564..32698762expressed protein
LOC_Os02g53470NANA2+32705140..32709525retrotransposon protein, putative, unclassified
LOC_Os02g53480OsAffx.12625.1.S1_at11/112+32711190..32712443hypothetical protein
LOC_Os02g53490Os.18637.1.S1_at11/112+32715133..32717511Metal tolerance protein C3, putative, expressed
LOC_Os02g53500Os.2212.1.S1_at11/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500Os.51090.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500OsAffx.30917.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53510Os.57181.1.S1_at11/112+32722558..32723477expressed protein
LOC_Os02g53520Os.26359.1.S1_a_at6/112+32725320..32734354kinesin motor protein, putative, expressed
LOC_Os02g53530Os.50791.1.S1_at11/112+32744254..32745505zinc finger protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57181.1.S1_at--369--9251Chr02:32722977..32723001 (25 bp)
TCCTACCAGTCTTGCTTCCAAGATT
LOC_Os02g53510
Os.57181.1.S1_at--830--2811Chr02:32722958..32722982 (25 bp)
AAGATTGGTGGTTCCCGCTCGTCAA
LOC_Os02g53510
Os.57181.1.S1_at--826--10451Chr02:32722863..32722887 (25 bp)
TTAGCAGGTGCAGGTTCAAAACTTT
LOC_Os02g53510
Os.57181.1.S1_at--42--9011Chr02:32722839..32722863 (25 bp)
TGAATCGGTTCATTCCACGGATGAA
LOC_Os02g53510
Os.57181.1.S1_at--199--7991Chr02:32722821..32722845 (25 bp)
GGATGAAACCTAGCCGAGCCATGTA
LOC_Os02g53510
Os.57181.1.S1_at--638--1671Chr02:32722805..32722829 (25 bp)
AGCCATGTATGCTCCATTTTAGTAT
LOC_Os02g53510
Os.57181.1.S1_at--886--6771Chr02:32722779..32722803 (25 bp)
GTTACTCTGTTACTTCTACTCATCA
LOC_Os02g53510
Os.57181.1.S1_at--398--391Chr02:32722758..32722782 (25 bp)
ATCACTGGCTTCACCGCTGGAGAAG
LOC_Os02g53510
Os.57181.1.S1_at--468--4991Chr02:32722694..32722718 (25 bp)
GCATGATCATTGGAGCCCGGACTGT
LOC_Os02g53510
Os.57181.1.S1_at--48--9471Chr02:32722670..32722694 (25 bp)
TCTGGACTCTGGTGTCTTGAGCTAT
LOC_Os02g53510
Os.57181.1.S1_at--1157--2951Chr02:32722600..32722624 (25 bp)
AATGGCAGCAGCATACTGTGACACT
LOC_Os02g53510
Target Sequence 
TCCTACCAGTCTTGCTTCCAAGATTGGTGGTTCCCGCTCGTCAACCGCCGCCGGTGAGCCGAGATCACCGACGAGAGCAA
TGAAATTTGCAAAGATCATCAATCGATCGATCGATTAGCAGGTGCAGGTTCAAAACTTTGAATCGGTTCATTCCACGGAT
GAAACCTAGCCGAGCCATGTATGCTCCATTTTAGTATAGTTACTCTGTTACTTCTACTCATCACTGGCTTCACCGCTGGA
GAAGAGGAAAAATGGAAAATGATAGGTAGGGGATATTTTTGCTGCATGATCATTGGAGCCCGGACTGTCTGGACTCTGGT
GTCTTGAGCTATTAGGCATTAATAACTACAGTATCAATTAATCTTGGATGTAAATGTAATGGCAGCAGCATACTGTGACA
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis