Browse Element(s) Details


Os.51090.1.S1_at

Description gb:AK060622.1
DB_XREF= gi:32970640
TID=Os.51090.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023093B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-D10, full insert sequence.
FL= gb:AK071374.1 gb:AK060622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5953011/11Protein phosphatase 2C containing protein, expressed
LOC_Os02g535001/11Activator 1 36 kDa subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59500NANA3+33803951..33809773retrotransposon protein, putative, unclassified
LOC_Os03g59510Os.28943.1.S1_x_at4/113+33810533..33813668retrotransposon protein, putative, unclassified
LOC_Os03g59520Os.37083.2.S1_at2/113+33814605..33815990retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59520OsAffx.20257.1.S1_at1/113+33814605..33815990retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59530Os.51090.1.S1_at11/113+33825754..33830800Protein phosphatase 2C containing protein, expressed
LOC_Os03g59540OsAffx.25769.1.S1_at11/113+33830973..33833472RING zinc finger protein, putative, expressed
LOC_Os03g59550Os.54313.1.S1_at10/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59550OsAffx.13552.1.S1_at7/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59560OsAffx.3644.1.S1_at10/113+33839759..33840638hypothetical protein
LOC_Os03g59570Os.53086.1.S1_at11/113+33844760..33846548cytokinin synthase, putative, expressed
LOC_Os03g59580Os.5014.1.S1_at11/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59580OsAffx.25770.1.S1_at9/113+33855756..33859933hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0009934biological_processregulation of meristem organization
GO:0005663cellular_componentDNA replication factor C complex
GO:0005886cellular_componentplasma membrane
GO:0004721molecular_functionphosphoprotein phosphatase activity
GO:0005524molecular_functionATP binding
GO:0015071molecular_functionprotein phosphatase type 2C activity
GO:0016887molecular_functionATPase activity
GO:0019901molecular_functionprotein kinase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51090.1.S1_at--148--2231Chr03:33830107..33830131 (25 bp)
ACAAGATTCACGGTTCAGCTCTGAA
LOC_Os03g59530
Os.51090.1.S1_at--134--7391Chr03:33830138..33830162 (25 bp)
GTGAGCCAGGCAGTTCGCATGACAA
LOC_Os03g59530
Os.51090.1.S1_at--866--2491Chr03:33830314..33830338 (25 bp)
AACAGGGCAGCGCAGCTTGTCCTTG
LOC_Os03g59530
Os.51090.1.S1_at--543--211Chr03:33830517..33830541 (25 bp)
ATTTGTAGACCTGGACACTCTGAGA
LOC_Os03g59530
Os.51090.1.S1_at--710--1991Chr03:33830533..33830557 (25 bp)
ACTCTGAGAAGTGATCCCTGATCCT
LOC_Os03g59530
Os.51090.1.S1_at--15--571Chr03:33830553..33830577 (25 bp)
ATCCTGAATCCCCAATTGCTTTTGT
LOC_Os03g59530
Os.51090.1.S1_at--728--3151Chr03:33830566..33830590 (25 bp)
AATTGCTTTTGTCAGGTCCGGAGAT
LOC_Os03g59530
Os.51090.1.S1_at--746--9971Chr03:33830596..33830620 (25 bp)
TACCTGCTGCTCGAACAGTTGAACA
LOC_Os03g59530
Os.51090.1.S1_at--1160--2311Chr03:33830663..33830687 (25 bp)
AAAGTTGAGCCAGGTGCTCCGGTGT
LOC_Os03g59530
Os.51090.1.S1_at--442--5271Chr03:33830698..33830722 (25 bp)
GAATGCTACAGTTCTCCTTGTATGC
LOC_Os03g59530
Os.51090.1.S1_at--1066--4172Chr03:33830738..33830762 (25 bp)
CCCTTGTGCGGTTATGCCTGTAAAT
LOC_Os03g59530
Target Sequence 
ACAAGATTCACGGTTCAGCTCTGAACCATATGTGAGCCAGGCAGTTCGCATGACAAAAGCATGCTTAGCCTCTGCCCTTA
TTGCTAGCGACGGGCTATGGGATGTTATTAGCGCTAACAGGGCAGCGCAGCTTGTCCTTGAGGGTAAGCAGAAGTACAGC
GAGCAGAAAACTTCAGCAGATAAAGTAGCACATCATGTGTTAAGTGAAGCTAGGAAATTGCGAACCAAGGACAACACATC
AGTAATATTTGTAGACCTGGACACTCTGAGAAGTGATCCCTGATCCTGAATCCCCAATTGCTTTTGTCAGGTCCGGAGAT
CGTCCTACCTGCTGCTCGAACAGTTGAACAACACTATTTCTTTTGTTTCACTGGTAGTTAATATCCTTTGTCAAAGTTGA
GCCAGGTGCTCCGGTGTTGCAGAGGATGAATGCTACAGTTCTCCTTGTATGCAAATACCCAGGGAGCCCCTTGTGCGGTT
ATGCCTGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis