Browse Element(s) Details


Os.5014.1.S1_at

Description gb:AK106765.1
DB_XREF= gi:32991974
TID=Os.5014.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E10, full insert sequence.
FL= gb:AK106765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5958011/11hydrolase, NUDIX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59530Os.51090.1.S1_at11/113+33825754..33830800Protein phosphatase 2C containing protein, expressed
LOC_Os03g59540OsAffx.25769.1.S1_at11/113+33830973..33833472RING zinc finger protein, putative, expressed
LOC_Os03g59550Os.54313.1.S1_at10/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59550OsAffx.13552.1.S1_at7/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59560OsAffx.3644.1.S1_at10/113+33839759..33840638hypothetical protein
LOC_Os03g59570Os.53086.1.S1_at11/113+33844760..33846548cytokinin synthase, putative, expressed
LOC_Os03g59580Os.5014.1.S1_at11/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59580OsAffx.25770.1.S1_at9/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59590Os.15115.1.S1_at11/113+33866546..33872778small GTP-binding protein domain containing protein, expressed
LOC_Os03g59600OsAffx.25771.1.S1_at11/113+33875089..33876906EF hand family protein, expressed
LOC_Os03g59610Os.26674.1.S1_at11/113+33877932..33880305Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g59620Os.50460.1.S1_at11/113+33880629..33885081patatin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5014.1.S1_at--128--931Chr03:33856083..33856107 (25 bp)
AGGCATCCACAGGAGTTCTGGTTTT
LOC_Os03g59580
Os.5014.1.S1_at--87--10351Chr03:33856057..33856081 (25 bp)
TTTATCTTCTTTTAACTCTCCCTAG
LOC_Os03g59580
Os.5014.1.S1_at--53--4291Chr03:33856037..33856061 (25 bp)
CCTAGGCTCCAACTTTGCAGAATGC
LOC_Os03g59580
Os.5014.1.S1_at--126--10051Chr03:33855983..33856007 (25 bp)
TAGTAGGTGGTCTTTGACCCTTCAT
LOC_Os03g59580
Os.5014.1.S1_at--731--5811Chr03:33855968..33855992 (25 bp)
GACCCTTCATTGCTATCTAGCGTAG
LOC_Os03g59580
Os.5014.1.S1_at--708--5711Chr03:33855929..33855953 (25 bp)
GACGGGAATTCTCACAACTTTTAAG
LOC_Os03g59580
Os.5014.1.S1_at--655--3151Chr03:33855900..33855924 (25 bp)
AATTCTCGTGTCTATTGTTCCCTCA
LOC_Os03g59580
Os.5014.1.S1_at--686--10131Chr03:33855852..33855876 (25 bp)
TATCCTGGTGAGCATTTTGTACGTC
LOC_Os03g59580
Os.5014.1.S1_at--517--6991Chr03:33855834..33855858 (25 bp)
GTACGTCACTGCTCCAGATTACGGA
LOC_Os03g59580
Os.5014.1.S1_at--874--6551Chr03:33855818..33855842 (25 bp)
GATTACGGAGCTGCATACGCTATGT
LOC_Os03g59580
Os.5014.1.S1_at--990--6871Chr03:33855795..33855819 (25 bp)
GTATTAACTTGACCACACCTGAAAT
LOC_Os03g59580
Target Sequence 
AGGCATCCACAGGAGTTCTGGTTTTGTTTATCTTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACA
ATGTACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTATATCTCATCGAAGACGGG
AATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTCCCTCACCACCTATCAAGCTCAATTACTTTATCCTGGT
GAGCATTTTGTACGTCACTGCTCCAGATTACGGAGCTGCATACGCTATGTATTAACTTGACCACACCTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis