Browse Element(s) Details


Os.50460.1.S1_at

Description gb:AK121284.1
DB_XREF= gi:37990907
TID=Os.50460.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108N19, full insert sequence.
FL= gb:AK121284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5962011/11patatin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59580Os.5014.1.S1_at11/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59580OsAffx.25770.1.S1_at9/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59590Os.15115.1.S1_at11/113+33866546..33872778small GTP-binding protein domain containing protein, expressed
LOC_Os03g59600OsAffx.25771.1.S1_at11/113+33875089..33876906EF hand family protein, expressed
LOC_Os03g59610Os.26674.1.S1_at11/113+33877932..33880305Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g59620Os.50460.1.S1_at11/113+33880629..33885081patatin, putative, expressed
LOC_Os03g59630NANA3+33891231..33892098hypothetical protein
LOC_Os03g59640Os.14194.1.S1_at10/113+33894227..33900896magnesium chelatase ATPase subunit D family protein, expressed
LOC_Os03g59650Os.52838.1.S1_at11/113+33901307..33906998BRCA1 C Terminus domain containing protein, expressed
LOC_Os03g59660Os.53298.1.S1_at11/113+33908054..33910453Adapter-related protein complex 1 sigma 1B subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50460.1.S1_at--2--91Chr03:33881186..33881210 (25 bp)
ATTCTGGAGTTACTGCACAAGGTAC
LOC_Os03g59620
Os.50460.1.S1_at--240--5551Chr03:33881139..33881163 (25 bp)
GAAACTGGTTCATGCAATACTGGCA
LOC_Os03g59620
Os.50460.1.S1_at--1158--2731Chr03:33881112..33881136 (25 bp)
AATATAGCTAGTCAACCCTCTACCT
LOC_Os03g59620
Os.50460.1.S1_at--1109--3231Chr03:33881084..33881108 (25 bp)
CAAGCATTGCTGTTTCTGAAGGAGA
LOC_Os03g59620
Os.50460.1.S1_at--185--8151Chr03:33880939..33880963 (25 bp)
GGACACTTCTGACTGTCCTGGAGAT
LOC_Os03g59620
Os.50460.1.S1_at--480--6331Chr03:33880908..33880932 (25 bp)
GATGCAGCTGACTCAAACGATCTTT
LOC_Os03g59620
Os.50460.1.S1_at--855--9691Chr03:33880896..33880920 (25 bp)
TCAAACGATCTTTCAGCTGCTCATA
LOC_Os03g59620
Os.50460.1.S1_at--702--4771Chr03:33880881..33880905 (25 bp)
GCTGCTCATACTGATTCTGTGACTT
LOC_Os03g59620
Os.50460.1.S1_at--612--7371Chr03:33880863..33880887 (25 bp)
GTGACTTCACAACATTCTTCAGCTG
LOC_Os03g59620
Os.50460.1.S1_at--109--7631Chr03:33880778..33880802 (25 bp)
GGGAAAGCCATAGTATCTCCGTTTA
LOC_Os03g59620
Os.50460.1.S1_at--270--2271Chr03:33880630..33880654 (25 bp)
AAATCAGTTGGCTGCCATTCTTTCG
LOC_Os03g59620
Target Sequence 
ATTCTGGAGTTACTGCACAAGGTACAGATAGAAGCACAGACACATCTGAAACTGGTTCATGCAATACTGGCAACAATATA
GCTAGTCAACCCTCTACCTCTACAAGCATTGCTGTTTCTGAAGGAGAACTGCTGCAACCAGAAAGGAGTACTAACGGAAT
TCTAATTAATGTTGTCAAAAGAAAGAGTGTGTTTGGTGAGCATGAAAGCGAAGCTGAAACCGAATCATATGTGGACACAA
CAAATTTGGACACTTCTGACTGTCCTGGAGATAACAAAGATGCAGCTGACTCAAACGATCTTTCAGCTGCTCATACTGAT
TCTGTGACTTCACAACATTCTTCAGCTGATGAATAGATGCTAGAGTTTGAAAGATTACCGGTGATAGTTTATTACAGCAA
TGTTGTACGGGAAAGCCATAGTATCTCCGTTTATAGAGAAACTGTAGCGCAGATGGTGATGACTGATGATATACGTCTTA
TGCTAATGATATGTTTATGTTTGGTGTATACATGTACTGTAAAATTATTGTTTGTTGCATCACACATGCATTAGTGAAAT
CAGTTGGCTGCCATTCTTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis