Browse Element(s) Details


Os.26674.1.S1_at

Description gb:AK070201.1
DB_XREF= gi:32980225
TID=Os.26674.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042C15, full insert sequence.
FL= gb:AK070201.1 gb:AK105938.1 gb:AK060010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5961011/11Sex determination protein tasselseed 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59580Os.5014.1.S1_at11/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59580OsAffx.25770.1.S1_at9/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59590Os.15115.1.S1_at11/113+33866546..33872778small GTP-binding protein domain containing protein, expressed
LOC_Os03g59600OsAffx.25771.1.S1_at11/113+33875089..33876906EF hand family protein, expressed
LOC_Os03g59610Os.26674.1.S1_at11/113+33877932..33880305Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g59620Os.50460.1.S1_at11/113+33880629..33885081patatin, putative, expressed
LOC_Os03g59630NANA3+33891231..33892098hypothetical protein
LOC_Os03g59640Os.14194.1.S1_at10/113+33894227..33900896magnesium chelatase ATPase subunit D family protein, expressed
LOC_Os03g59650Os.52838.1.S1_at11/113+33901307..33906998BRCA1 C Terminus domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009688biological_processabscisic acid biosynthesis
GO:0010182biological_processsugar mediated signaling
GO:0005829cellular_componentcytosol
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26674.1.S1_at--35--3251Chr03:33879721..33879745 (25 bp)
CAAGCATGCTGTGGTGGGTCTAACC
LOC_Os03g59610
Os.26674.1.S1_at--1140--7351Chr03:33879785..33879809 (25 bp)
GTGAACTGCGTATCTCCCTATGCAG
LOC_Os03g59610
Os.26674.1.S1_at--558--4611Chr03:33879846..33879870 (25 bp)
GCGAGCGCAAGGATGATGCCCTGAA
LOC_Os03g59610
Os.26674.1.S1_at--577--9171Chr03:33879862..33879886 (25 bp)
TGCCCTGAAAGACTTTTTCGCCTTT
LOC_Os03g59610
Os.26674.1.S1_at--458--7471Chr03:33879912..33879936 (25 bp)
GTGTGGATCTGCTACCTAAGGATGT
LOC_Os03g59610
Os.26674.1.S1_at--852--2711Chr03:33879942..33879966 (25 bp)
AAGCAGTGCTCTACTTGGCAAGCGA
LOC_Os03g59610
Os.26674.1.S1_at--931--9711Chr03:33879990..33880014 (25 bp)
TCAACCTCATGGTGGATGGTGGCTT
LOC_Os03g59610
Os.26674.1.S1_at--339--7731Chr03:33880007..33880031 (25 bp)
GGTGGCTTTACCTCTGTGAATCACA
LOC_Os03g59610
Os.26674.1.S1_at--83--7851Chr03:33880076..33880100 (25 bp)
GGTACTCTAGTTTCAGATGCTATGT
LOC_Os03g59610
Os.26674.1.S1_at--883--6331Chr03:33880091..33880115 (25 bp)
GATGCTATGTACCATTCTGATTTTA
LOC_Os03g59610
Os.26674.1.S1_at--911--2031Chr03:33880188..33880212 (25 bp)
ACTATGATTGTATTGCCGGTGCTTA
LOC_Os03g59610
Target Sequence 
CAAGCATGCTGTGGTGGGTCTAACCAAGAATGTAGCTGGGGAATTGGGGAAGCATGGGATACGCGTGAACTGCGTATCTC
CCTATGCAGTGCCCACGGCTCTCTCCATGCCGTATCTGCCCCAGGGCGAGCGCAAGGATGATGCCCTGAAAGACTTTTTC
GCCTTTGTTGGTGGTGAAGCAAACCTGAAAGGTGTGGATCTGCTACCTAAGGATGTTGCTCAAGCAGTGCTCTACTTGGC
AAGCGATGAAGCGAGGTACATCAGCGCGCTCAACCTCATGGTGGATGGTGGCTTTACCTCTGTGAATCACAATTTGAGAG
CATTTGAAGATTAACAGAAGTTGTTAGGCACAATTGGTACTCTAGTTTCAGATGCTATGTACCATTCTGATTTTAGAACT
TTGATCAATTACCTAAAGTAAGAATGTCAATAAGGAATGCAATCTTGTATCTGTGGTATTGTATAGTACTATGATTGTAT
TGCCGGTGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis