Browse Element(s) Details


OsAffx.25770.1.S1_at

Description tigr:9631.m05865
TID=OsAffx.25770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NUDIX domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g595809/11hydrolase, NUDIX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59530Os.51090.1.S1_at11/113+33825754..33830800Protein phosphatase 2C containing protein, expressed
LOC_Os03g59540OsAffx.25769.1.S1_at11/113+33830973..33833472RING zinc finger protein, putative, expressed
LOC_Os03g59550Os.54313.1.S1_at10/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59550OsAffx.13552.1.S1_at7/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59560OsAffx.3644.1.S1_at10/113+33839759..33840638hypothetical protein
LOC_Os03g59570Os.53086.1.S1_at11/113+33844760..33846548cytokinin synthase, putative, expressed
LOC_Os03g59580Os.5014.1.S1_at11/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59580OsAffx.25770.1.S1_at9/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59590Os.15115.1.S1_at11/113+33866546..33872778small GTP-binding protein domain containing protein, expressed
LOC_Os03g59600OsAffx.25771.1.S1_at11/113+33875089..33876906EF hand family protein, expressed
LOC_Os03g59610Os.26674.1.S1_at11/113+33877932..33880305Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g59620Os.50460.1.S1_at11/113+33880629..33885081patatin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25770.1.S1_at--60--731NONE
ATGTTGGGAGGTGCACCTACAGCAT
NONE
OsAffx.25770.1.S1_at--531--3731Chr03:33858797..33858821 (25 bp)
CTACAGCATTTATTGGCAGGAACTA
LOC_Os03g59580
OsAffx.25770.1.S1_at--1066--4931Chr03:33858792..33858816 (25 bp)
GCATTTATTGGCAGGAACTAGCTCA
LOC_Os03g59580
OsAffx.25770.1.S1_at--1123--8151Chr03:33858779..33858803 (25 bp)
GGAACTAGCTCAAGTAGCACCTTTT
LOC_Os03g59580
OsAffx.25770.1.S1_at--889--1571Chr03:33858773..33858797 (25 bp)
AGCTCAAGTAGCACCTTTTACATGT
LOC_Os03g59580
OsAffx.25770.1.S1_at--635--6951Chr03:33858770..33858790 (21 bp)
GTAGCACCTTTTACATGTATAGAAC
LOC_Os03g59580
OsAffx.25770.1.S1_at--547--7531Chr03:33857553..33857575 (23 bp)
GTGGCTTGCCAAGTGTCAGAAACAT
LOC_Os03g59580
OsAffx.25770.1.S1_at--720--4391Chr03:33857546..33857570 (25 bp)
GCCAAGTGTCAGAAACATATTTGCA
LOC_Os03g59580
OsAffx.25770.1.S1_at--310--10731Chr03:33857526..33857550 (25 bp)
TTGCATGTGTTTTTCTCTTACATAA
LOC_Os03g59580
OsAffx.25770.1.S1_at--869--7411Chr03:33857520..33857544 (25 bp)
GTGTTTTTCTCTTACATAACCGTCA
LOC_Os03g59580
OsAffx.25770.1.S1_at--942--9771NONE
TAACCGTCAAACTGCAATTTCTGGG
NONE
Target Sequence 
ATGTTGGGAGGTGCACCTACAGCATTTATTGGCAGGAACTAGCTCAAGTAGCACCTTTTACATGTATAGAACTAGTAATG
ATGAAACTTCTGATGATGAACCGAAGAAAATTGTTGAAGTTCTCATGATAAACTCTCAAAGTGGTCCAGGTCTCCTGTTT
CCAAAGGGAGGATGGGAGAATGATGAAACTGTTGAGCAGGCAGCTGCTCGAGAGGCTGTAGAAGAAGCTGGAGTTCGTGG
AGATATAGTGGCTTGCCAAGTGTCAGAAACATATTTGCATGTGTTTTTCTCTTACATAACCGTCAAACTGCAATTTCTGG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis