Browse Element(s) Details


Os.53086.1.S1_at

Description gb:AK070756.1
DB_XREF= gi:32980779
TID=Os.53086.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023065G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065G16, full insert sequence.
FL= gb:AK070756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5957011/11cytokinin synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59530Os.51090.1.S1_at11/113+33825754..33830800Protein phosphatase 2C containing protein, expressed
LOC_Os03g59540OsAffx.25769.1.S1_at11/113+33830973..33833472RING zinc finger protein, putative, expressed
LOC_Os03g59550Os.54313.1.S1_at10/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59550OsAffx.13552.1.S1_at7/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59560OsAffx.3644.1.S1_at10/113+33839759..33840638hypothetical protein
LOC_Os03g59570Os.53086.1.S1_at11/113+33844760..33846548cytokinin synthase, putative, expressed
LOC_Os03g59580Os.5014.1.S1_at11/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59580OsAffx.25770.1.S1_at9/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59590Os.15115.1.S1_at11/113+33866546..33872778small GTP-binding protein domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009691biological_processcytokinin biosynthesis
GO:0009824molecular_functionadenylate dimethylallyltransferase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53086.1.S1_at--1139--471Chr03:33845950..33845974 (25 bp)
ATCTGAGAAGCGCAGGCACCAACCT
LOC_Os03g59570
Os.53086.1.S1_at--562--2011Chr03:33846024..33846048 (25 bp)
ACTCTCAAGACATTCAGGCTGCTGC
LOC_Os03g59570
Os.53086.1.S1_at--446--9331Chr03:33846052..33846076 (25 bp)
TCGCCATTGCCGATCAAATTCAGAG
LOC_Os03g59570
Os.53086.1.S1_at--207--131Chr03:33846069..33846093 (25 bp)
ATTCAGAGCTCGTCAGTCGGATCAA
LOC_Os03g59570
Os.53086.1.S1_at--631--4911Chr03:33846109..33846133 (25 bp)
GCTTCTGCGGTCAACATCTCGATGA
LOC_Os03g59570
Os.53086.1.S1_at--56--471Chr03:33846124..33846148 (25 bp)
ATCTCGATGACCTGCCAATTGCAAT
LOC_Os03g59570
Os.53086.1.S1_at--640--9911Chr03:33846169..33846193 (25 bp)
TACTGGTAACTGGTTGACTCCTTTT
LOC_Os03g59570
Os.53086.1.S1_at--617--5711Chr03:33846184..33846208 (25 bp)
GACTCCTTTTTGTTTTTGCTGTGTT
LOC_Os03g59570
Os.53086.1.S1_at--762--3151Chr03:33846234..33846258 (25 bp)
AATTGCGCGCGAGAGTGTAACTTAT
LOC_Os03g59570
Os.53086.1.S1_at--702--3811Chr03:33846290..33846314 (25 bp)
CTCCTCTGATTTTGGGTGTGTAACA
LOC_Os03g59570
Os.53086.1.S1_at--378--7071Chr03:33846367..33846391 (25 bp)
GTAATAGCCTCTCCTTGTAACATAG
LOC_Os03g59570
Target Sequence 
ATCTGAGAAGCGCAGGCACCAACCTACTTACATACACATACATGACCAAACACAAAAACGCAGAGCACCATGCCACTCTC
AAGACATTCAGGCTGCTGCCAATCGCCATTGCCGATCAAATTCAGAGCTCGTCAGTCGGATCAAACGATGAAGGCTGCTG
CTTCTGCGGTCAACATCTCGATGACCTGCCAATTGCAATGCAAAGCAAGATTGTTCATATACTGGTAACTGGTTGACTCC
TTTTTGTTTTTGCTGTGTTTCTTTGTGAGATGAGGAGATTGATGAATTGCGCGCGAGAGTGTAACTTATGAGTTTTGAGT
TTTTTTTTTCTTTTTGGTTTCTCCTCTGATTTTGGGTGTGTAACAGTAGGAGTAAAAACTAAAAAGTATTGACTTGGATG
TTAATTGGGGGATTGATGTAATAGCCTCTCCTTGTAACATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis