Browse Element(s) Details


OsAffx.3644.1.S1_at

Description tigr:9631.m05863
TID=OsAffx.3644.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5956010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59520Os.37083.2.S1_at2/113+33814605..33815990retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59520OsAffx.20257.1.S1_at1/113+33814605..33815990retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59530Os.51090.1.S1_at11/113+33825754..33830800Protein phosphatase 2C containing protein, expressed
LOC_Os03g59540OsAffx.25769.1.S1_at11/113+33830973..33833472RING zinc finger protein, putative, expressed
LOC_Os03g59550Os.54313.1.S1_at10/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59550OsAffx.13552.1.S1_at7/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59560OsAffx.3644.1.S1_at10/113+33839759..33840638hypothetical protein
LOC_Os03g59570Os.53086.1.S1_at11/113+33844760..33846548cytokinin synthase, putative, expressed
LOC_Os03g59580Os.5014.1.S1_at11/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59580OsAffx.25770.1.S1_at9/113+33855756..33859933hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3644.1.S1_at--94--6331Chr03:33840562..33840586 (25 bp)
GATGCGGCGGCAACGAATCGGAGAG
LOC_Os03g59560
OsAffx.3644.1.S1_at--337--1651Chr03:33840539..33840563 (25 bp)
AGCGACAGGGAGCAGCCACCAGGGC
LOC_Os03g59560
OsAffx.3644.1.S1_at--70--4371Chr03:33840524..33840548 (25 bp)
CCACCAGGGCTGCAGGACGAGACGA
LOC_Os03g59560
OsAffx.3644.1.S1_at--508--1391Chr03:33840495..33840519 (25 bp)
AGACGCCGGCTTAGGCTTGTGGACA
LOC_Os03g59560
OsAffx.3644.1.S1_at--1159--10431Chr03:33840485..33840509 (25 bp)
TTAGGCTTGTGGACAGCGTGTGCCC
LOC_Os03g59560
OsAffx.3644.1.S1_at--708--3791Chr03:33840453..33840477 (25 bp)
CTGCCTACCGGTAGATCGTCTCCTG
LOC_Os03g59560
OsAffx.3644.1.S1_at--623--10031Chr03:33840447..33840466 (20 bp)
TAGATCGTCTCCTGCGGCGTAAATA
LOC_Os03g59560
OsAffx.3644.1.S1_at--183--4291NONE
CCTGCGGCGTAAATATACCGTCGGT
NONE
OsAffx.3644.1.S1_at--292--9972Chr09:13866613..13866637 (25 bp)
TACCGTCGGTGTCGCACAACCATTG
NONE
OsAffx.3644.1.S1_at--1091--7452Chr09:13866621..13866645 (25 bp)
GTGTCGCACAACCATTGCGCGAAAA
NONE
OsAffx.3644.1.S1_at--468--2291Chr03:33839807..33839831 (25 bp)
AAATGACGCAGGAATGACGTCGCGG
LOC_Os03g59560
Target Sequence 
GATGCGGCGGCAACGAATCGGAGAGCGACAGGGAGCAGCCACCAGGGCTGCAGGACGAGACGAGACGAGACGCCGGCTTA
GGCTTGTGGACAGCGTGTGCCCTGCGCCCCTGCCTACCGGTAGATCGTCTCCTGCGGCGTAAATATACCGTCGGTGTCGC
ACAACCATTGCGCGAAAATGACGCAGGAATGACGTCGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis