Browse Element(s) Details


OsAffx.25769.1.S1_at

Description tigr:9631.m05861
TID=OsAffx.25769.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At3g05250
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5954011/11RING zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59500NANA3+33803951..33809773retrotransposon protein, putative, unclassified
LOC_Os03g59510Os.28943.1.S1_x_at4/113+33810533..33813668retrotransposon protein, putative, unclassified
LOC_Os03g59520Os.37083.2.S1_at2/113+33814605..33815990retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59520OsAffx.20257.1.S1_at1/113+33814605..33815990retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59530Os.51090.1.S1_at11/113+33825754..33830800Protein phosphatase 2C containing protein, expressed
LOC_Os03g59540OsAffx.25769.1.S1_at11/113+33830973..33833472RING zinc finger protein, putative, expressed
LOC_Os03g59550Os.54313.1.S1_at10/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59550OsAffx.13552.1.S1_at7/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59560OsAffx.3644.1.S1_at10/113+33839759..33840638hypothetical protein
LOC_Os03g59570Os.53086.1.S1_at11/113+33844760..33846548cytokinin synthase, putative, expressed
LOC_Os03g59580Os.5014.1.S1_at11/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59580OsAffx.25770.1.S1_at9/113+33855756..33859933hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25769.1.S1_at--680--7351Chr03:33832393..33832417 (25 bp)
GTGAATCATTTGAGCGGCACTACAT
LOC_Os03g59540
OsAffx.25769.1.S1_at--395--8231Chr03:33832378..33832402 (25 bp)
GGCACTACATAAATCAGGACCCCAG
LOC_Os03g59540
OsAffx.25769.1.S1_at--602--3551Chr03:33832157..33832181 (25 bp)
CATCTTTCAGATGCACACGACTTGA
LOC_Os03g59540
OsAffx.25769.1.S1_at--360--6331Chr03:33832148..33832172 (25 bp)
GATGCACACGACTTGATTACACAAT
LOC_Os03g59540
OsAffx.25769.1.S1_at--636--10171Chr03:33831996..33832020 (25 bp)
TATAGGCAATACTTCCAGCGTTCAG
LOC_Os03g59540
OsAffx.25769.1.S1_at--614--331Chr03:33831988..33832012 (25 bp)
ATACTTCCAGCGTTCAGCAATTCTG
LOC_Os03g59540
OsAffx.25769.1.S1_at--692--2731Chr03:33831962..33831986 (25 bp)
AAGCAACGCAAGTATCTTCGCAAGA
LOC_Os03g59540
OsAffx.25769.1.S1_at--1119--2491Chr03:33831938..33831962 (25 bp)
AACATTTGGCTTCAAACCTGGCTAA
LOC_Os03g59540
OsAffx.25769.1.S1_at--277--8151Chr03:33831911..33831933 (23 bp)
GGAAATACAGGCTCTTACACGGGAT
LOC_Os03g59540
OsAffx.25769.1.S1_at--749--3331Chr03:33831514..33831534 (21 bp)
CACGGGATGAAAATGTTGACGCTAT
LOC_Os03g59540
OsAffx.25769.1.S1_at--741--10751Chr03:33831499..33831523 (25 bp)
TTGACGCTATTATCTACCACATCCA
LOC_Os03g59540
Target Sequence 
GTGAATCATTTGAGCGGCACTACATAAATCAGGACCCCAGAAAAAGACATCTTTCAGATGCACACGACTTGATTACACAA
TTCTATAGTATACGAGATATTATAGGCAATACTTCCAGCGTTCAGCAATTCTGGAAGCAACGCAAGTATCTTCGCAAGAA
CATTTGGCTTCAAACCTGGCTAAGACAGGAAATACAGGCTCTTACACGGGATGAAAATGTTGACGCTATTATCTACCACA
TCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis