Browse Element(s) Details


Os.15115.1.S1_at

Description gb:AK101920.1
DB_XREF= gi:32987129
TID=Os.15115.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071K01, full insert sequence.
FL= gb:AK101920.1 gb:AK058711.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5959011/11small GTP-binding protein domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59570Os.53086.1.S1_at11/113+33844760..33846548cytokinin synthase, putative, expressed
LOC_Os03g59580Os.5014.1.S1_at11/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59580OsAffx.25770.1.S1_at9/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59590Os.15115.1.S1_at11/113+33866546..33872778small GTP-binding protein domain containing protein, expressed
LOC_Os03g59600OsAffx.25771.1.S1_at11/113+33875089..33876906EF hand family protein, expressed
LOC_Os03g59610Os.26674.1.S1_at11/113+33877932..33880305Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g59620Os.50460.1.S1_at11/113+33880629..33885081patatin, putative, expressed
LOC_Os03g59630NANA3+33891231..33892098hypothetical protein
LOC_Os03g59640Os.14194.1.S1_at10/113+33894227..33900896magnesium chelatase ATPase subunit D family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005819cellular_componentspindle
GO:0005886cellular_componentplasma membrane
GO:0030427cellular_componentsite of polarized growth
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15115.1.S1_at--804--6951Chr03:33867403..33867427 (25 bp)
GTAGAATAGTCCATGCTGCGCAGCA
LOC_Os03g59590
Os.15115.1.S1_at--809--5571Chr03:33867334..33867358 (25 bp)
GACAATACCGTCAACTTCTGAACCG
LOC_Os03g59590
Os.15115.1.S1_at--780--6691Chr03:33867314..33867334 (21 bp)
GTTCCCTTATGGTTGTCTCAGTTGG
LOC_Os03g59590
Os.15115.1.S1_at--705--7611Chr03:33866938..33866962 (25 bp)
GGGAATAGCTGCTTACCGAGTCTAT
LOC_Os03g59590
Os.15115.1.S1_at--198--1431Chr03:33866903..33866927 (25 bp)
AGAACACATCGTCTTGAAGCTCTCC
LOC_Os03g59590
Os.15115.1.S1_at--217--5411Chr03:33866888..33866912 (25 bp)
GAAGCTCTCCTGGACAGTGCTGAAA
LOC_Os03g59590
Os.15115.1.S1_at--535--3091Chr03:33866865..33866889 (25 bp)
AATAAAGTGCTTTCCTCCTTTCACT
LOC_Os03g59590
Os.15115.1.S1_at--119--7351Chr03:33866789..33866813 (25 bp)
GTGAAACTTTGTCCAGAGAACCCTT
LOC_Os03g59590
Os.15115.1.S1_at--213--9651Chr03:33866746..33866770 (25 bp)
TCAGCAATCAATCGTTCTGCGTATT
LOC_Os03g59590
Os.15115.1.S1_at--832--6771Chr03:33866609..33866633 (25 bp)
GTTACTATATCATGTCTCGGTTCTT
LOC_Os03g59590
Os.15115.1.S1_at--853--2951Chr03:33866575..33866599 (25 bp)
AATGGCCCTGGATTCTTTTGGCATT
LOC_Os03g59590
Target Sequence 
GTAGAATAGTCCATGCTGCGCAGCAGCCTCATCTGAGCATTCCAGAGACTGAAGCTGGGAAAACACGCAGACAATACCGT
CAACTTCTGAACCGTTCCCTTATGGTTGTCTCAGTTGGAGCTGCCGTTGCAGTTGTGGGAATAGCTGCTTACCGAGTCTA
TGCAGCTAGGAAGAACACATCGTCTTGAAGCTCTCCTGGACAGTGCTGAAATAAAGTGCTTTCCTCCTTTCACTGCCCAT
CAACCGGATCTTTTCAGATAATTTTTTACTTCTGAGCTTCATAACGTGAAACTTTGTCCAGAGAACCCTTTTATGTACAG
ATGTGTTTTCAGCAATCAATCGTTCTGCGTATTGGATTTCGCATTTTGCGNCTATAATTATGTAGCTGATAAACTGCTAT
GACTAAACTAGCTCTGGCAAAACATTAGTACTGCCGTACAATTTTGTTCTTTTAGCAAATGTGCTGTTACTATATCATGT
CTCGGTTCTTTTTTTAATTAATGGCCCTGGATTCTTTTGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis