Browse Element(s) Details


OsAffx.25771.1.S1_at

Description tigr:9631.m05867
TID=OsAffx.25771.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EF hand, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5960011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59580Os.5014.1.S1_at11/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59580OsAffx.25770.1.S1_at9/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59590Os.15115.1.S1_at11/113+33866546..33872778small GTP-binding protein domain containing protein, expressed
LOC_Os03g59600OsAffx.25771.1.S1_at11/113+33875089..33876906EF hand family protein, expressed
LOC_Os03g59610Os.26674.1.S1_at11/113+33877932..33880305Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g59620Os.50460.1.S1_at11/113+33880629..33885081patatin, putative, expressed
LOC_Os03g59630NANA3+33891231..33892098hypothetical protein
LOC_Os03g59640Os.14194.1.S1_at10/113+33894227..33900896magnesium chelatase ATPase subunit D family protein, expressed
LOC_Os03g59650Os.52838.1.S1_at11/113+33901307..33906998BRCA1 C Terminus domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25771.1.S1_at--1102--5491Chr03:33876466..33876490 (25 bp)
GAACACGTTGGAGCGGATCACCACA
LOC_Os03g59600
OsAffx.25771.1.S1_at--597--9271Chr03:33876279..33876306 (25 bp)
TCCTGCAGTCGAAGGTGCCGGTGAT
LOC_Os03g59600
OsAffx.25771.1.S1_at--62--871Chr03:33876213..33876237 (25 bp)
AGGCCGGCCTTGAAAATGTGCTGGA
LOC_Os03g59600
OsAffx.25771.1.S1_at--363--7311Chr03:33876196..33876220 (25 bp)
GTGCTGGACTTCATCATGTGTACAT
LOC_Os03g59600
OsAffx.25771.1.S1_at--855--1271Chr03:33876159..33876183 (25 bp)
AGATCTATCTGGAGTGCTCGGCGCT
LOC_Os03g59600
OsAffx.25771.1.S1_at--295--711Chr03:33875670..33875694 (25 bp)
ATGAGGTCTTCTACTGTGCCCAAAT
LOC_Os03g59600
OsAffx.25771.1.S1_at--763--2291Chr03:33875649..33875673 (25 bp)
AAATGGCAGTGCTTCGCCCAACAAC
LOC_Os03g59600
OsAffx.25771.1.S1_at--470--4551Chr03:33875634..33875658 (25 bp)
GCCCAACAACTCCTCTATTTGATAA
LOC_Os03g59600
OsAffx.25771.1.S1_at--1000--3331Chr03:33875589..33875613 (25 bp)
CACGGTGCATGATGGCTTTTCAACA
LOC_Os03g59600
OsAffx.25771.1.S1_at--739--6511Chr03:33875564..33875588 (25 bp)
GATATTTTCTCTTTATGACCGTGAC
LOC_Os03g59600
OsAffx.25771.1.S1_at--964--871Chr03:33875126..33875150 (25 bp)
ATGGCCTTATTACCTTCATTGGATT
LOC_Os03g59600
Target Sequence 
GAACACGTTGGAGCGGATCACCACATTCTGGCTCCCCAAGATCCGGCGCCTCCTGCAGTCGAAGGTGCCGGTGATTCTCG
CGGGGTGTAAGGTCGACCTAAGTGACAAGCAGCAGCAGGCCGGCCTTGAAAATGTGCTGGACTTCATCATGTGTACATTT
AGAGAGGTTGAGATCTATCTGGAGTGCTCGGCGCTTCACCGGATAAAGGTGGATGAGGTCTTCTACTGTGCCCAAATGGC
AGTGCTTCGCCCAACAACTCCTCTATTTGATAAAGCAACGCGATCTATAAAGCCACGGTGCATGATGGCTTTTCAACAGA
TATTTTCTCTTTATGACCGTGACAAGGATGGTGCAGTTAGTGATGCGGAGATGAATGCATTTCTGGTTAGATGCTTCAAG
GTCTCTCTCCAACCTGCTGAAATTGCAGATATGAAGAGGGTGGTTCAACAACATATGATTGGATGCGTGAATGATAATGG
CCTTATTACCTTCATTGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis