Browse Element(s) Details


Os.26359.1.S1_a_at

Description gb:AK068672.1
DB_XREF= gi:32978689
TID=Os.26359.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29965 kinesin heavy chain-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159K16, full insert sequence.
FL= gb:AK068672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g535206/11kinesin motor protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53470NANA2+32705140..32709525retrotransposon protein, putative, unclassified
LOC_Os02g53480OsAffx.12625.1.S1_at11/112+32711190..32712443hypothetical protein
LOC_Os02g53490Os.18637.1.S1_at11/112+32715133..32717511Metal tolerance protein C3, putative, expressed
LOC_Os02g53500Os.2212.1.S1_at11/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500Os.51090.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500OsAffx.30917.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53510Os.57181.1.S1_at11/112+32722558..32723477expressed protein
LOC_Os02g53520Os.26359.1.S1_a_at6/112+32725320..32734354kinesin motor protein, putative, expressed
LOC_Os02g53530Os.50791.1.S1_at11/112+32744254..32745505zinc finger protein, putative, expressed
LOC_Os02g53540NANA2+32751206..32754497retrotransposon protein, putative, unclassified
LOC_Os02g53550NANA2+32755126..32761261retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26359.1.S1_a_at--727--2671Chr02:32725675..32725699 (25 bp)
AAGCGTTGTCGGAAGAAGTCACCAA
LOC_Os02g53520
Os.26359.1.S1_a_at--40--1471Chr02:32725662..32725686 (25 bp)
AGAAGTCACCAAGCTCATGAACCAA
LOC_Os02g53520
Os.26359.1.S1_a_at--823--2611Chr02:32725596..32725620 (25 bp)
AACCCCGCGTAGAGCCAACAGTGGA
LOC_Os02g53520
Os.26359.1.S1_a_at--546--3451Chr02:32725545..32725569 (25 bp)
CAGTAGACGACATGAGCCAGCTCCA
LOC_Os02g53520
Os.26359.1.S1_a_at--751--2251Chr02:32725379..32725403 (25 bp)
AACATGTGGGTTCTAGTGGCAAAAC
LOC_Os02g53520
Os.26359.1.S1_a_at--146--5531Chr02:32725353..32725377 (25 bp)
GAAAAAGTCTCAAGGCCATGATCTT
LOC_Os02g53520
Os.26359.1.S1_a_at--997--8471Chr02:32725305..32725329 (25 bp)
TGGCTCGTAACATCATAACTCTAGG
NONE
Os.26359.1.S1_a_at--537--1951Chr02:32725258..32725282 (25 bp)
ACTGGCTTGGGTACGTCTGTATGTA
NONE
Os.26359.1.S1_a_at--450--6671Chr02:32725206..32725230 (25 bp)
GTTGCAGTGTGAATTAGTTCCCATC
NONE
Os.26359.1.S1_a_at--703--6871Chr02:32725179..32725203 (25 bp)
GTATATTCGCCGGTTGATCAAAGTT
NONE
Os.26359.1.S1_a_at--397--6011Chr02:32725128..32725152 (25 bp)
GAGAGCTTCCATAATTGCTGCAATG
NONE
Target Sequence 
AAGCGTTGTCGGAAGAAGTCACCAAGCTCATGAACCAAAACGAGAAGCTTGCTTCTGAGTTGGCATCGGTGAGAAGTCCA
ACCCCGCGTAGAGCCAACAGTGGACTGAGAGGTACTCGGAGGGATAGCATCAGTAGACGACATGAGCCAGCTCCAAGAAG
AGACAACAACGCAGGCTACGAGAGAGAAAAGGCATTAGAAGCTGTGCTTATGGAGAAGGAACAAAAGGAAGCAGAACTCC
AAAGGAGAATTGAGGAGTCGAAGCAAAAGGAAGCCTTCTTGGAAAGTGAACTTGCAAACATGTGGGTTCTAGTGGCAAAA
CTGAAAAAGTCTCAAGGCCATGATCTTGAGGATTTTGACACCAAATATATTGGCTCGTAACATCATAACTCTAGGCTAAT
TAATTATTAGTAGTGCGACTGGCTTGGGTACGTCTGTATGTAAGATAAGAGATTTATACCAGGTTTCCTGTTGCAGTGTG
AATTAGTTCCCATCTTGTATATTCGCCGGTTGATCAAAGTTGTGAGGCCTTGTTGGGCTGATGTGCTGAGAGCTTCCATA
ATTGCTGCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26359.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis